KEGG   PATHWAY: suls00020
Entry
suls00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurospirillum diekertiae SL2-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
suls00020  Citrate cycle (TCA cycle)
suls00020

Module
suls_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:suls00020]
suls_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:suls00020]
suls_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:suls00020]
Other DBs
GO: 0006099
Organism
Sulfurospirillum diekertiae SL2-1 [GN:suls]
Gene
Sdiek1_2913  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Sdiek1_1653  Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Sdiek1_1486  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Sdiek1_1491  2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Sdiek1_1492  2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Sdiek1_1493  hypothetical protein [KO:K00177] [EC:1.2.7.3]
Sdiek1_1490  Photosystem I iron-sulfur center [KO:K00176] [EC:1.2.7.3]
Sdiek1_1489  Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Sdiek1_1488  Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Sdiek1_0827  8-methylmenaquinol:fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Sdiek1_1388  8-methylmenaquinol:fumarate reductase membrane anchor subunit [KO:K00241]
Sdiek1_0828  8-methylmenaquinol:fumarate reductase membrane anchor subunit [KO:K00241]
Sdiek1_0506  Fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Sdiek1_0507  Fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Sdiek1_0505  Fumarate reductase cytochrome b subunit [KO:K25996]
Sdiek1_1726  L(+)-tartrate dehydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
Sdiek1_1725  Fumarate hydratase class I, anaerobic [KO:K01678] [EC:4.2.1.2]
Sdiek1_1501  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Sdiek1_1487  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Sdiek1_0608  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Sdiek1_2394  2-oxoglutarate carboxylase small subunit [KO:K01959] [EC:6.4.1.1]
Sdiek1_0726  2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
Sdiek1_0727  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Sdiek1_2447  Pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
suls00010  Glycolysis / Gluconeogenesis
suls00061  Fatty acid biosynthesis
suls00071  Fatty acid degradation
suls00190  Oxidative phosphorylation
suls00220  Arginine biosynthesis
suls00250  Alanine, aspartate and glutamate metabolism
suls00280  Valine, leucine and isoleucine degradation
suls00350  Tyrosine metabolism
suls00470  D-Amino acid metabolism
suls00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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