KEGG   PATHWAY: svc00630
Entry
svc00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Stella vacuolata
Class
Metabolism; Carbohydrate metabolism
Pathway map
svc00630  Glyoxylate and dicarboxylate metabolism
svc00630

Module
svc_M00621  Glycine cleavage system [PATH:svc00630]
svc_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:svc00630]
Other DBs
GO: 0046487 0043648
Organism
Stella vacuolata [GN:svc]
Gene
STVA_50650  acsA_2; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
STVA_16800  acs_2; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
STVA_40090  acsA_1; AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
STVA_16220  malate synthase [KO:K01638] [EC:2.3.3.9]
STVA_48050  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STVA_35680  hypothetical protein [KO:K01647] [EC:2.3.3.1]
STVA_29000  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
STVA_41240  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
STVA_00470  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
STVA_14250  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
STVA_43470  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
STVA_02070  atoB; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
STVA_17790  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
STVA_32600  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
STVA_02060  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
STVA_52540  phaJ; (R)-specific enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
STVA_28600  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
STVA_50710  isovaleryl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
STVA_39250  pccA; acetyl/propionyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
STVA_39270  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
STVA_45480  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
STVA_10800  lactate dehydrogenase [KO:K00104] [EC:1.1.99.14]
STVA_10810  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
STVA_10820  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
STVA_23490  katE; catalase C [KO:K03781] [EC:1.11.1.6]
STVA_08420  catalase [KO:K03781] [EC:1.11.1.6]
STVA_03500  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
STVA_49260  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
STVA_51000  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
STVA_11750  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
STVA_39290  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
STVA_12820  cbbZ; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
STVA_29400  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
STVA_54820  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
STVA_24510  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
STVA_13320  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
STVA_19580  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
STVA_50730  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
STVA_22650  type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
STVA_30020  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
STVA_53790  glnT; glutamine synthetase 3 [KO:K01915] [EC:6.3.1.2]
STVA_31180  glyA_2; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
STVA_11760  glyA_1; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
STVA_54510  gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 [KO:K00282] [EC:1.4.4.2]
STVA_54520  glycine dehydrogenase (aminomethyl-transferring) [KO:K00283] [EC:1.4.4.2]
STVA_54490  gcvT2; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
STVA_29260  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STVA_35040  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STVA_48000  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STVA_54500  gcvH; glycine cleavage system H protein [KO:K02437]
STVA_12650  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
STVA_01760  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
STVA_04120  NAD-dependent formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
STVA_04100  fdsA; NAD-dependent formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
STVA_04090  fdsB; formate dehydrogenase subunit beta [KO:K00124]
STVA_04080  fdsG; formate dehydrogenase subunit gamma [KO:K00127]
STVA_53380  esterase [KO:K01432] [EC:3.5.1.9]
STVA_12320  esterase [KO:K01432] [EC:3.5.1.9]
STVA_20390  esterase [KO:K01432] [EC:3.5.1.9]
STVA_02120  AMP-dependent synthetase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
svc00010  Glycolysis / Gluconeogenesis
svc00020  Citrate cycle (TCA cycle)
svc00030  Pentose phosphate pathway
svc00053  Ascorbate and aldarate metabolism
svc00071  Fatty acid degradation
svc00230  Purine metabolism
svc00250  Alanine, aspartate and glutamate metabolism
svc00260  Glycine, serine and threonine metabolism
svc00620  Pyruvate metabolism
svc00710  Carbon fixation by Calvin cycle
svc00750  Vitamin B6 metabolism
svc00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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