KEGG   PATHWAY: syn00020
Entry
syn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Synechocystis sp. PCC 6803
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
syn00020  Citrate cycle (TCA cycle)
syn00020

Module
syn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:syn00020]
syn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:syn00020]
Other DBs
GO: 0006099
Organism
Synechocystis sp. PCC 6803 [GN:syn]
Gene
sll0401  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
slr0665  hypothetical protein [KO:K01682] [EC:4.2.1.3 4.2.1.99]
slr1289  icd; isocitrate dehydrogenase (NADP+) [KO:K00031] [EC:1.1.1.42]
slr1096  phdD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
sll1557  sucD; succinyl-CoA synthetase [KO:K01902] [EC:6.2.1.5]
sll1023  sucC; succinate--CoA ligase [KO:K01903] [EC:6.2.1.5]
slr1233  frdA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
sll1625  sdhB; succinate dehydrogenase iron-sulphur protein subunit [KO:K00240] [EC:1.3.5.1]
sll0823  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
slr0201  hdrB; heterodisulfide reductase subunit B [KO:K00241]
slr0018  fumC; fumarase [KO:K01679] [EC:4.2.1.2]
sll0891  citH; 2-ketoacid dehydrogenase; malate dehydrogenase; lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
slr1934  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
sll1721  pdhB; pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
sll1841  odhB; dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
sll0741  nifJ; pyruvate oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
syn00010  Glycolysis / Gluconeogenesis
syn00053  Ascorbate and aldarate metabolism
syn00061  Fatty acid biosynthesis
syn00071  Fatty acid degradation
syn00190  Oxidative phosphorylation
syn00220  Arginine biosynthesis
syn00250  Alanine, aspartate and glutamate metabolism
syn00280  Valine, leucine and isoleucine degradation
syn00350  Tyrosine metabolism
syn00470  D-Amino acid metabolism
syn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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