KEGG   PATHWAY: syo00020
Entry
syo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Synechocystis sp. IPPAS B-1465
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
syo00020  Citrate cycle (TCA cycle)
syo00020

Module
syo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:syo00020]
syo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:syo00020]
Other DBs
GO: 0006099
Organism
Synechocystis sp. IPPAS B-1465 [GN:syo]
Gene
C7I86_12015  citrate synthase [KO:K01647] [EC:2.3.3.1]
C7I86_15625  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C7I86_01355  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C7I86_00925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7I86_09405  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
C7I86_01925  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C7I86_04875  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C7I86_06190  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C7I86_13460  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C7I86_12855  heterodisulfide reductase [KO:K00241]
C7I86_11675  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C7I86_13125  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C7I86_10545  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
C7I86_04480  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
C7I86_10660  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
C7I86_14685  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
syo00010  Glycolysis / Gluconeogenesis
syo00053  Ascorbate and aldarate metabolism
syo00061  Fatty acid biosynthesis
syo00071  Fatty acid degradation
syo00190  Oxidative phosphorylation
syo00220  Arginine biosynthesis
syo00250  Alanine, aspartate and glutamate metabolism
syo00280  Valine, leucine and isoleucine degradation
syo00350  Tyrosine metabolism
syo00470  D-Amino acid metabolism
syo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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