KEGG   PATHWAY: taf00020
Entry
taf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermosipho africanus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
taf00020  Citrate cycle (TCA cycle)
taf00020

Module
taf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:taf00020]
taf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:taf00020]
Other DBs
GO: 0006099
Organism
Thermosipho africanus [GN:taf]
Gene
THA_55  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
THA_336  vorB; 2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
THA_190  2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
THA_1977  2-oxoacid ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
THA_335  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
THA_1978  ferrodoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
THA_97  2-oxoglutarate synthase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
THA_334  porG; 2-oxoglutarate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
THA_96  keto/oxoacid ferredoxin oxidoreductase, gamma subunit, putative [KO:K00177] [EC:1.2.7.3]
THA_337  conserved domain protein [KO:K00176] [EC:1.2.7.3]
THA_191  OorD subunit of 2-oxoglutarate:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
THA_1470  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
THA_519  pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
THA_518  pyruvate oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
THA_521  pyruvate/ketoisovalerate oxidoreductases common subunit gamma [KO:K00172] [EC:1.2.7.1]
THA_520  pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
taf00010  Glycolysis / Gluconeogenesis
taf00053  Ascorbate and aldarate metabolism
taf00061  Fatty acid biosynthesis
taf00071  Fatty acid degradation
taf00190  Oxidative phosphorylation
taf00220  Arginine biosynthesis
taf00250  Alanine, aspartate and glutamate metabolism
taf00280  Valine, leucine and isoleucine degradation
taf00470  D-Amino acid metabolism
taf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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