KEGG   PATHWAY: tco00020
Entry
tco00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermobacillus composti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tco00020  Citrate cycle (TCA cycle)
tco00020

Module
tco_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tco00020]
tco_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tco00020]
tco_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tco00020]
tco_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tco00020]
Other DBs
GO: 0006099
Organism
Thermobacillus composti [GN:tco]
Gene
Theco_2614  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Theco_3031  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Theco_2613  isocitrate dehydrogenase, NADP-dependent, prokaryotic type [KO:K00031] [EC:1.1.1.42]
Theco_1716  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Theco_1958  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Theco_2020  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Theco_2019  2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Theco_2115  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Theco_2116  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Theco_2722  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Theco_2721  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Theco_2723  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
Theco_1294  hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01676] [EC:4.2.1.2]
Theco_2612  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Theco_0050  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
Theco_1719  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Theco_1718  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit [KO:K00162] [EC:1.2.4.1]
Theco_1717  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00627] [EC:2.3.1.12]
Theco_1702  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Theco_1703  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tco00010  Glycolysis / Gluconeogenesis
tco00053  Ascorbate and aldarate metabolism
tco00061  Fatty acid biosynthesis
tco00071  Fatty acid degradation
tco00190  Oxidative phosphorylation
tco00220  Arginine biosynthesis
tco00250  Alanine, aspartate and glutamate metabolism
tco00280  Valine, leucine and isoleucine degradation
tco00350  Tyrosine metabolism
tco00470  D-Amino acid metabolism
tco00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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