KEGG   PATHWAY: thab03030
Entry
thab03030                   Pathway                                
Name
DNA replication - Thalassotalea sp. LPB0316
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
thab03030  DNA replication
thab03030

Organism
Thalassotalea sp. LPB0316 [GN:thab]
Gene
LP316_09885  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
LP316_12980  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
LP316_14325  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
LP316_09645  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
LP316_07755  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
LP316_00645  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
LP316_03540  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
LP316_01350  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
LP316_00245  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
LP316_01805  ssb; single-stranded DNA-binding protein [KO:K03111]
LP316_14505  ssb; single-stranded DNA-binding protein [KO:K03111]
LP316_12985  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
LP316_09640  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
LP316_03775  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
LP316_13325  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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