KEGG   PATHWAY: thi03430
Entry
thi03430                    Pathway                                
Name
Mismatch repair - Thiomonas arsenitoxydans
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
thi03430  Mismatch repair
thi03430

Other DBs
GO: 0006298
Organism
Thiomonas arsenitoxydans [GN:thi]
Gene
THI_1796  mutS; DNA mismatch repair protein [KO:K03555]
THI_2129  Putative Mismatch repair ATPase (MutS family) [KO:K03555]
THI_1564  putative DNA mismatch repair protein mutL [KO:K03572]
THI_1295  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
THI_2101  xseA; Exodeoxyribonuclease 7 large subunit (Exodeoxyribonuclease VII large subunit) (Exonuclease VII large subunit) [KO:K03601] [EC:3.1.11.6]
THI_1787  xseB; Exodeoxyribonuclease VII small subunit (Exonuclease VII small subunit) [KO:K03602] [EC:3.1.11.6]
THI_1145  recJ; Single-stranded-DNA-specific exonuclease recJ [KO:K07462] [EC:3.1.-.-]
THI_0087  ssb; Single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) [KO:K03111]
THI_p0033  ssb; Single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) [KO:K03111]
THI_2829  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
THI_0002  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
THI_2291  putative DNA polymerase III subunit tau [Contains: DNA polymerase III subunit gamma] (DnaX) [KO:K02343] [EC:2.7.7.7]
THI_0168  putative DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
THI_1879  putative DNA-directed DNA polymerase [KO:K02341] [EC:2.7.7.7]
THI_1346  putative protein fusion of DNA polymerase III, epsilon subunit and Excinuclease ABC, C subunit [KO:K02342] [EC:2.7.7.7]
THI_1689  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
THI_2980  putative DNA polymerase III chi subunit, HolC [KO:K02339] [EC:2.7.7.7]
THI_1898  ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [KO:K01972] [EC:6.5.1.2]
THI_0080  ecoRVM; Modification methylase EcoRV (Adenine-specific methyltransferase EcoRV) (M.EcoRV) [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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