KEGG   PATHWAY: tma00020
Entry
tma00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermotoga maritima MSB8
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tma00020  Citrate cycle (TCA cycle)
tma00020

Module
tma_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tma00020]
Other DBs
GO: 0006099
Organism
Thermotoga maritima MSB8 [GN:tma]
Gene
TM0290  citrate synthase [KO:K01647] [EC:2.3.3.1]
TM1148  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TM0381  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TM0878  pyruvate:ferredoxin 2-oxidoreductase-related protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TM1164  2-oxoacid ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TM1759  2-oxoisovalerate oxidoreductase, beta subunit, putative [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TM1165  2-oxoacid ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TM0405  keto/oxoacid ferredoxin oxidoreductase, beta subunit, putative [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TM0406  keto/oxoacid ferredoxin oxidoreductase, gamma subunit, putative [KO:K00177] [EC:1.2.7.3]
TM1758  2-oxoisovalerate oxidoreductase, gamma subunit, putative [KO:K00176] [EC:1.2.7.3]
TM0879  ferredoxin [KO:K00176] [EC:1.2.7.3]
TM0540  fumarate hydratase, N-terminal subunit [KO:K01677] [EC:4.2.1.2]
TM0541  fumarate hydratase, C-terminal subunit [KO:K01678] [EC:4.2.1.2]
TM0017  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
TM0018  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
TM0015  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
TM0016  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tma00010  Glycolysis / Gluconeogenesis
tma00053  Ascorbate and aldarate metabolism
tma00061  Fatty acid biosynthesis
tma00071  Fatty acid degradation
tma00190  Oxidative phosphorylation
tma00220  Arginine biosynthesis
tma00250  Alanine, aspartate and glutamate metabolism
tma00280  Valine, leucine and isoleucine degradation
tma00350  Tyrosine metabolism
tma00470  D-Amino acid metabolism
tma00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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