KEGG   PATHWAY: tni00240
Entry
tni00240                    Pathway                                
Name
Pyrimidine metabolism - Thioalkalivibrio nitratireducens
Class
Metabolism; Nucleotide metabolism
Pathway map
tni00240  Pyrimidine metabolism
tni00240

Module
tni_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:tni00240]
tni_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:tni00240]
tni_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:tni00240]
Other DBs
GO: 0006220 0006213
Organism
Thioalkalivibrio nitratireducens [GN:tni]
Gene
TVNIR_3135  carB_[H]; Carbamoyl-phosphate synthase large chain [KO:K01955] [EC:6.3.5.5]
TVNIR_3136  carA_[H]; Carbamoyl-phosphate synthase small chain [KO:K01956] [EC:6.3.5.5]
TVNIR_0303  Aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
TVNIR_3750  Aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
TVNIR_0302  pyrC'_[H]; Dihydroorotase [KO:K01465] [EC:3.5.2.3]
TVNIR_1171  pyrC_[H]; Dihydroorotase [KO:K01465] [EC:3.5.2.3]
TVNIR_1510  pyrD_[H]; Dihydroorotate dehydrogenase [KO:K00254] [EC:1.3.5.2]
TVNIR_3760  pyrE_[H]; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
TVNIR_1803  pyrF_[H]; Orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
TVNIR_1970  pyrH_[H]; Uridylate kinase [KO:K09903] [EC:2.7.4.22]
TVNIR_0872  ndk_[H]; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
TVNIR_2341  mazG_[H]; Nucleoside triphosphate pyrophosphohydrolase MazG [KO:K04765] [EC:3.6.1.9]
TVNIR_2517  yhdE_[C]; Septum formation protein Maf [KO:K06287] [EC:3.6.1.-]
TVNIR_1890  pyrG_[H]; CTP synthase [KO:K01937] [EC:6.3.4.2]
TVNIR_1807  cmk_[H]; Cytidylate kinase [KO:K00945] [EC:2.7.4.25]
TVNIR_2959  surE_[H]; 5-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
TVNIR_0304  pyrR_[H]; Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein PyrR [KO:K02825] [EC:2.4.2.9]
TVNIR_2901  ygdH_[H]; Decarboxylase family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
TVNIR_1681  nrdD_[H]; Ribonucleotide reductase of class III (anaerobic), large subunit [KO:K21636] [EC:1.1.98.6]
TVNIR_2373  dcd_[H]; Deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
TVNIR_2334  nrdA_[H]; Ribonucleotide reductase of class Ia (aerobic), alpha subunit [KO:K00525] [EC:1.17.4.1]
TVNIR_3568  nrdEB_[H]; Ribonucleotide reductase of class II (coenzyme B12-dependent) [KO:K00525] [EC:1.17.4.1]
TVNIR_2333  nrdB_[H]; Ribonucleotide reductase of class Ia (aerobic), beta subunit [KO:K00526] [EC:1.17.4.1]
TVNIR_1788  MazG nucleotide pyrophosphohydrolase [KO:K16904] [EC:3.6.1.12]
TVNIR_1587  tmk_[H]; Thymidylate kinase [KO:K00943] [EC:2.7.4.9]
TVNIR_0393  dut_[H]; Deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
TVNIR_1076  thyA_[H]; Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
TVNIR_3753  amaB_[H]; N-carbamoyl-L-amino acid amidohydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
TVNIR_1296  ycdI_[C]; putative reductase RutE [KO:K09019] [EC:1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
tni00030  Pentose phosphate pathway
tni00220  Arginine biosynthesis
tni00250  Alanine, aspartate and glutamate metabolism
tni00280  Valine, leucine and isoleucine degradation
tni00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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