KEGG   PATHWAY: tpf04111
Entry
tpf04111                    Pathway                                
Name
Cell cycle - yeast - Tetrapisispora phaffii
Description
Mitotic cell cycle progression is accomplished through a reproducible sequence of events, DNA replication (S phase) and mitosis (M phase) separated temporally by gaps (G1 and G2 phases). G1, S, and G2 phases are collectively known as interphase. In yeast Cdc28 is the catalytic subunit of the cyclin-dependent kinase (CDK). At G1 phase Cdc28 associates with G1-cyclins Cln1 to Cln3, while B-type cyclins Clb1 to Clb6 regulate Cdc28 during S, G2, and M phases. Cln3/Cdc28 activity is required for cells to pass through 'start', the commitment point in G1. When Cln3/Cdc28 accumulates more than a certain threshold, SBF (Swi4/Swi6) and MBF (Mbp1/Swi6) are activated, promoting transcription of Cln1, Cln2, and other genes required for S-phase progression. Cln1 and Cln2 interacting with Cdc28 promote activation of B-type cyclin associated CDK, which drives DNA replication and entry into mitosis. Specifically, Cdc28 association with Clb2 and Clb1 promotes entry into mitosis. Cells suffering from DNA damage, spindle misorientation, or spindle assembly defect do not undergo the metaphase-anaphase transition for chromosome segregation and fail to exit from mitosis. The spindle assembly checkpoint activates Mad2, which in turn prevents chromosome segregation by inhibiting degradation of the securin Pds1. Moreover, Pds1 is phosphorylated and stabilized in response to DNA damage in a Chk1-dependent manner. The spindle checkpoint is also involved in the Cdc14 release from the nucleolus. Cdc14 dephosphorylates Swi5, Sic1, and Cdh1, leading to inhibition of Cdc28 and degradation of cyclin required for mitotic exit.
Class
Cellular Processes; Cell growth and death
Pathway map
tpf04111  Cell cycle - yeast
tpf04111

Other DBs
GO: 0000278
Organism
Tetrapisispora phaffii [GN:tpf]
Gene
TPHA_0H02890  TPHA0H02890; hypothetical protein [KO:K06646]
TPHA_0L01470  TPHA0L01470; hypothetical protein [KO:K04563] [EC:2.7.11.22]
TPHA_0K00750  TPHA0K00750; hypothetical protein [KO:K06649]
TPHA_0E00750  TPHA0E00750; hypothetical protein [KO:K06649]
TPHA_0E03630  TPHA0E03630; hypothetical protein [KO:K06648]
TPHA_0D03640  TPHA0D03640; hypothetical protein [KO:K06650]
TPHA_0D00140  TPHA0D00140; hypothetical protein [KO:K03085]
TPHA_0B00880  TPHA0B00880; hypothetical protein [KO:K06647]
TPHA_0D03080  TPHA0D03080; hypothetical protein [KO:K06651]
TPHA_0E03530  TPHA0E03530; hypothetical protein [KO:K02213]
TPHA_0B00480  TPHA0B00480; hypothetical protein [KO:K02603]
TPHA_0M01130  TPHA0M01130; hypothetical protein [KO:K02604]
TPHA_0N00720  TPHA0N00720; hypothetical protein [KO:K02605]
TPHA_0G00360  TPHA0G00360; hypothetical protein [KO:K02606]
TPHA_0B04370  TPHA0B04370; hypothetical protein [KO:K02607]
TPHA_0I01490  TPHA0I01490; hypothetical protein [KO:K02608]
TPHA_0H00160  TPHA0H00160; hypothetical protein [KO:K02540] [EC:5.6.2.3]
TPHA_0O00410  TPHA0O00410; hypothetical protein [KO:K02541] [EC:5.6.2.3]
TPHA_0D00920  TPHA0D00920; hypothetical protein [KO:K02212] [EC:5.6.2.3]
TPHA_0K01140  TPHA0K01140; hypothetical protein [KO:K02209] [EC:5.6.2.3]
TPHA_0D03350  TPHA0D03350; hypothetical protein [KO:K02542] [EC:5.6.2.3]
TPHA_0I01960  TPHA0I01960; hypothetical protein [KO:K02210] [EC:5.6.2.3]
TPHA_0D01100  TPHA0D01100; hypothetical protein [KO:K12414]
TPHA_0A04330  TPHA0A04330; hypothetical protein [KO:K02214] [EC:2.7.11.1]
TPHA_0M01260  TPHA0M01260; hypothetical protein [KO:K02309]
TPHA_0C01020  TPHA0C01020; hypothetical protein [KO:K06628]
TPHA_0N01520  TPHA0N01520; hypothetical protein [KO:K12412]
TPHA_0C02530  TPHA0C02530; hypothetical protein [KO:K12412]
TPHA_0K00360  TPHA0K00360; hypothetical protein [KO:K12411]
TPHA_0D02630  TPHA0D02630; hypothetical protein [KO:K12411]
TPHA_0E00290  TPHA0E00290; hypothetical protein [KO:K12413]
TPHA_0J00630  TPHA0J00630; hypothetical protein [KO:K04371] [EC:2.7.11.24]
TPHA_0C02880  TPHA0C02880; hypothetical protein [KO:K04371] [EC:2.7.11.24]
TPHA_0A02850  TPHA0A02850; hypothetical protein [KO:K06652]
TPHA_0F02290  TPHA0F02290; hypothetical protein [KO:K03348]
TPHA_0C00830  TPHA0C00830; hypothetical protein [KO:K03349]
TPHA_0E00740  TPHA0E00740; hypothetical protein [KO:K03350]
TPHA_0J00790  TPHA0J00790; hypothetical protein [KO:K03351]
TPHA_0D01340  TPHA0D01340; hypothetical protein [KO:K03352]
TPHA_0N01870  TPHA0N01870; hypothetical protein [KO:K03353]
TPHA_0A05290  TPHA0A05290; hypothetical protein [KO:K03355]
TPHA_0C01030  TPHA0C01030; hypothetical protein [KO:K03356]
TPHA_0N01290  TPHA0N01290; hypothetical protein [KO:K03357]
TPHA_0H00640  TPHA0H00640; hypothetical protein [KO:K03358]
TPHA_0C00510  TPHA0C00510; hypothetical protein [KO:K12416]
TPHA_0J01890  TPHA0J01890; hypothetical protein [KO:K03363]
TPHA_0D02190  TPHA0D02190; hypothetical protein [KO:K03094]
TPHA_0P00850  TPHA0P00850; hypothetical protein [KO:K03347]
TPHA_0P01470  TPHA0P01470; hypothetical protein [KO:K03868] [EC:2.3.2.32]
TPHA_0E00560  TPHA0E00560; hypothetical protein [KO:K03360]
TPHA_0P00330  TPHA0P00330; hypothetical protein [KO:K03361]
TPHA_0D00580  TPHA0D00580; hypothetical protein [KO:K03361]
TPHA_0A00580  TPHA0A00580; hypothetical protein [KO:K06656]
TPHA_0P00810  TPHA0P00810; hypothetical protein [KO:K06657]
TPHA_0A03250  TPHA0A03250; hypothetical protein [KO:K06657]
TPHA_0C01780  TPHA0C01780; hypothetical protein [KO:K06655] [EC:2.7.11.22]
TPHA_0H01050  TPHA0H01050; hypothetical protein [KO:K06653]
TPHA_0J00380  TPHA0J00380; hypothetical protein [KO:K06654]
TPHA_0C03620  TPHA0C03620; hypothetical protein [KO:K02646]
TPHA_0J01730  TPHA0J01730; hypothetical protein [KO:K06659]
TPHA_0M00300  TPHA0M00300; hypothetical protein [KO:K08866] [EC:2.7.12.1]
TPHA_0J02260  TPHA0J02260; hypothetical protein [KO:K06679]
TPHA_0N00970  TPHA0N00970; hypothetical protein [KO:K02537]
TPHA_0J03180  TPHA0J03180; hypothetical protein [KO:K02178] [EC:2.7.11.1]
TPHA_0D02860  TPHA0D02860; hypothetical protein [KO:K02180]
TPHA_0D04090  TPHA0D04090; hypothetical protein [KO:K02307]
TPHA_0O01400  TPHA0O01400; hypothetical protein [KO:K02216] [EC:2.7.11.1]
TPHA_0A01780  TPHA0A01780; hypothetical protein [KO:K02627]
TPHA_0D04010  TPHA0D04010; hypothetical protein [KO:K02365] [EC:3.4.22.49]
TPHA_0A01150  TPHA0A01150; hypothetical protein [KO:K12575]
TPHA_0H00350  TPHA0H00350; hypothetical protein [KO:K04354]
TPHA_0P00880  TPHA0P00880; hypothetical protein [KO:K04382] [EC:3.1.3.16]
TPHA_0A03180  TPHA0A03180; hypothetical protein [KO:K04382] [EC:3.1.3.16]
TPHA_0H02620  TPHA0H02620; hypothetical protein [KO:K03456]
TPHA_0L00520  TPHA0L00520; hypothetical protein [KO:K03456]
TPHA_0J00740  TPHA0J00740; hypothetical protein [KO:K12577]
TPHA_0I02740  TPHA0I02740; hypothetical protein [KO:K06687]
TPHA_0J00420  TPHA0J00420; hypothetical protein [KO:K06660] [EC:2.7.11.21]
TPHA_0F02430  TPHA0F02430; hypothetical protein [KO:K06660] [EC:2.7.11.21]
TPHA_0O00530  TPHA0O00530; hypothetical protein [KO:K02181]
TPHA_0N01570  TPHA0N01570; hypothetical protein [KO:K02179]
TPHA_0L00420  TPHA0L00420; hypothetical protein [KO:K06681]
TPHA_0B01720  TPHA0B01720; hypothetical protein [KO:K06682]
TPHA_0H00760  TPHA0H00760; hypothetical protein [KO:K06683] [EC:2.7.11.1]
TPHA_0D03940  TPHA0D03940; hypothetical protein [KO:K06684] [EC:2.7.11.-]
TPHA_0D01650  TPHA0D01650; hypothetical protein [KO:K06685]
TPHA_0O01230  TPHA0O01230; hypothetical protein [KO:K06639] [EC:3.1.3.16 3.1.3.48]
TPHA_0F00770  TPHA0F00770; hypothetical protein [KO:K03364]
TPHA_0D03070  TPHA0D03070; hypothetical protein [KO:K23469]
TPHA_0D04040  TPHA0D04040; hypothetical protein [KO:K23469]
TPHA_0C02590  TPHA0C02590; hypothetical protein [KO:K02555] [EC:3.1.3.48]
TPHA_0D00430  TPHA0D00430; hypothetical protein [KO:K06667] [EC:2.7.11.22]
TPHA_0A03370  TPHA0A03370; hypothetical protein [KO:K02219]
TPHA_0A02630  TPHA0A02630; hypothetical protein [KO:K03114] [EC:2.7.11.1]
TPHA_0C01150  TPHA0C01150; hypothetical protein [KO:K10259]
TPHA_0G03200  TPHA0G03200; hypothetical protein [KO:K02515] [EC:2.7.11.-]
TPHA_0A02440  TPHA0A02440; hypothetical protein [KO:K02516] [EC:2.1.1.320]
TPHA_0E03640  TPHA0E03640; hypothetical protein [KO:K06668] [EC:2.7.11.-]
TPHA_0F02730  TPHA0F02730; hypothetical protein [KO:K02544]
TPHA_0J02330  TPHA0J02330; hypothetical protein [KO:K06663]
TPHA_0H03040  TPHA0H03040; hypothetical protein [KO:K02830] [EC:3.1.11.2]
TPHA_0B03350  TPHA0B03350; hypothetical protein [KO:K06662]
TPHA_0A02430  TPHA0A02430; hypothetical protein [KO:K02543]
TPHA_0B04650  TPHA0B04650; hypothetical protein [KO:K12578]
TPHA_0C02150  TPHA0C02150; hypothetical protein [KO:K06661]
TPHA_0E04010  TPHA0E04010; hypothetical protein [KO:K11272]
TPHA_0G01600  TPHA0G01600; hypothetical protein [KO:K02831] [EC:2.7.11.-]
TPHA_0C04570  TPHA0C04570; hypothetical protein [KO:K06641] [EC:2.7.11.1]
TPHA_0B03750  TPHA0B03750; hypothetical protein [KO:K09173]
TPHA_0M01630  TPHA0M01630; hypothetical protein [KO:K06665]
TPHA_0M02000  TPHA0M02000; hypothetical protein [KO:K06666]
TPHA_0P00340  TPHA0P00340; hypothetical protein [KO:K06636]
TPHA_0I01090  TPHA0I01090; hypothetical protein [KO:K06669]
TPHA_0A04510  TPHA0A04510; hypothetical protein [KO:K06670]
TPHA_0C01390  TPHA0C01390; hypothetical protein [KO:K06671]
TPHA_0L00880  TPHA0L00880; hypothetical protein [KO:K06672]
TPHA_0A02120  TPHA0A02120; hypothetical protein [KO:K06673]
TPHA_0C04440  TPHA0C04440; hypothetical protein [KO:K06674]
TPHA_0J00720  TPHA0J00720; hypothetical protein [KO:K06675]
TPHA_0K00620  TPHA0K00620; hypothetical protein [KO:K06676]
TPHA_0F02610  TPHA0F02610; hypothetical protein [KO:K06677]
TPHA_0D02160  TPHA0D02160; hypothetical protein [KO:K06678]
Compound
C00009  Orthophosphate
C00575  3',5'-Cyclic AMP
Reference
  Authors
Devault A, Vallen EA, Yuan T, Green S, Bensimon A, Schwob E
  Title
Identification of Tah11/Sid2 as the ortholog of the replication licensing factor Cdt1 in Saccharomyces cerevisiae.
  Journal
Curr Biol 12:689-94 (2002)
DOI:10.1016/S0960-9822(02)00768-6
Reference
  Authors
de Bruin RA, McDonald WH, Kalashnikova TI, Yates J 3rd, Wittenberg C
  Title
Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.
  Journal
Cell 117:887-98 (2004)
DOI:10.1016/j.cell.2004.05.025
Reference
  Authors
Costanzo M, Nishikawa JL, Tang X, Millman JS, Schub O, Breitkreuz K, Dewar D, Rupes I, Andrews B, Tyers M
  Title
CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast.
  Journal
Cell 117:899-913 (2004)
DOI:10.1016/j.cell.2004.05.024
Reference
  Authors
Pramila T, Miles S, GuhaThakurta D, Jemiolo D, Breeden LL
  Title
Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle.
  Journal
Genes Dev 16:3034-45 (2002)
DOI:10.1101/gad.1034302
Reference
  Authors
Schwickart M, Havlis J, Habermann B, Bogdanova A, Camasses A, Oelschlaegel T, Shevchenko A, Zachariae W
  Title
Swm1/Apc13 is an evolutionarily conserved subunit of the anaphase-promoting complex stabilizing the association of Cdc16 and Cdc27.
  Journal
Mol Cell Biol 24:3562-76 (2004)
DOI:10.1128/MCB.24.8.3562-3576.2004
Reference
  Authors
Penkner AM, Prinz S, Ferscha S, Klein F
  Title
Mnd2, an essential antagonist of the anaphase-promoting complex during meiotic prophase.
  Journal
Cell 120:789-801 (2005)
DOI:10.1016/j.cell.2005.01.017
Reference
  Authors
Pesin JA, Orr-Weaver TL
  Title
Regulation of APC/C activators in mitosis and meiosis.
  Journal
Annu Rev Cell Dev Biol 24:475-99 (2008)
DOI:10.1146/annurev.cellbio.041408.115949
Reference
PMID:7588610
  Authors
Dirick L, Bohm T, Nasmyth K
  Title
Roles and regulation of Cln-Cdc28 kinases at the start of the cell cycle of Saccharomyces cerevisiae.
  Journal
EMBO J 14:4803-13 (1995)
DOI:10.1002/j.1460-2075.1995.tb00162.x
Reference
  Authors
Bahler J
  Title
Cell-cycle control of gene expression in budding and fission yeast.
  Journal
Annu Rev Genet 39:69-94 (2005)
DOI:10.1146/annurev.genet.39.110304.095808
Reference
PMID:8066461
  Authors
Peter M, Herskowitz I
  Title
Direct inhibition of the yeast cyclin-dependent kinase Cdc28-Cln by Far1.
  Journal
Science 265:1228-31 (1994)
DOI:10.1126/science.8066461
Reference
PMID:9367986
  Authors
Henchoz S, Chi Y, Catarin B, Herskowitz I, Deshaies RJ, Peter M
  Title
Phosphorylation- and ubiquitin-dependent degradation of the cyclin-dependent kinase inhibitor Far1p in budding yeast.
  Journal
Genes Dev 11:3046-60 (1997)
DOI:10.1101/gad.11.22.3046
Reference
PMID:9346239
  Authors
Feldman RM, Correll CC, Kaplan KB, Deshaies RJ
  Title
A complex of Cdc4p, Skp1p, and Cdc53p/cullin catalyzes ubiquitination of the phosphorylated CDK inhibitor Sic1p.
  Journal
Cell 91:221-30 (1997)
DOI:10.1016/S0092-8674(00)80404-3
Reference
PMID:7954792
  Authors
Schwob E, Bohm T, Mendenhall MD, Nasmyth K
  Title
The B-type cyclin kinase inhibitor p40SIC1 controls the G1 to S transition in S. cerevisiae.
  Journal
Cell 79:233-44 (1994)
DOI:10.1016/0092-8674(94)90193-7
Reference
PMID:9841670
  Authors
Mendenhall MD, Hodge AE
  Title
Regulation of Cdc28 cyclin-dependent protein kinase activity during the cell cycle of the yeast Saccharomyces cerevisiae.
  Journal
Microbiol Mol Biol Rev 62:1191-243 (1998)
Reference
  Authors
Zachariae W, Nasmyth K
  Title
Whose end is destruction: cell division and the anaphase-promoting complex.
  Journal
Genes Dev 13:2039-58 (1999)
DOI:10.1101/gad.13.16.2039
Reference
  Authors
Jares P, Donaldson A, Blow JJ
  Title
The Cdc7/Dbf4 protein kinase: target of the S phase checkpoint?
  Journal
EMBO Rep 1:319-22 (2000)
DOI:10.1093/embo-reports/kvd076
Reference
  Authors
Elsasser S, Chi Y, Yang P, Campbell JL
  Title
Phosphorylation controls timing of Cdc6p destruction: A biochemical analysis.
  Journal
Mol Biol Cell 10:3263-77 (1999)
DOI:10.1091/mbc.10.10.3263
Reference
  Authors
Skowyra D, Koepp DM, Kamura T, Conrad MN, Conaway RC, Conaway JW, Elledge SJ, Harper JW
  Title
Reconstitution of G1 cyclin ubiquitination with complexes containing SCFGrr1 and Rbx1.
  Journal
Science 284:662-5 (1999)
DOI:10.1126/science.284.5414.662
Reference
  Authors
Mouillon JM, Persson BL
  Title
New aspects on phosphate sensing and signalling in Saccharomyces cerevisiae.
  Journal
FEMS Yeast Res 6:171-6 (2006)
DOI:10.1111/j.1567-1364.2006.00036.x
Reference
  Authors
Bean JM, Siggia ED, Cross FR
  Title
High functional overlap between MluI cell-cycle box binding factor and Swi4/6 cell-cycle box binding factor in the G1/S transcriptional program in Saccharomyces cerevisiae.
  Journal
Genetics 171:49-61 (2005)
DOI:10.1534/genetics.105.044560
Reference
PMID:9024629
  Authors
Deshaies RJ
  Title
Phosphorylation and proteolysis: partners in the regulation of cell division in budding yeast.
  Journal
Curr Opin Genet Dev 7:7-16 (1997)
DOI:10.1016/S0959-437X(97)80103-7
Reference
  Authors
Asano S, Park JE, Sakchaisri K, Yu LR, Song S, Supavilai P, Veenstra TD, Lee KS
  Title
Concerted mechanism of Swe1/Wee1 regulation by multiple kinases in budding yeast.
  Journal
EMBO J 24:2194-204 (2005)
DOI:10.1038/sj.emboj.7600683
Reference
PMID:9716410
  Authors
Kaiser P, Sia RA, Bardes EG, Lew DJ, Reed SI
  Title
Cdc34 and the F-box protein Met30 are required for degradation of the Cdk-inhibitory kinase Swe1.
  Journal
Genes Dev 12:2587-97 (1998)
DOI:10.1101/gad.12.16.2587
Reference
PMID:9925642
  Authors
Barral Y, Parra M, Bidlingmaier S, Snyder M
  Title
Nim1-related kinases coordinate cell cycle progression with the organization of the peripheral cytoskeleton in yeast.
  Journal
Genes Dev 13:176-87 (1999)
DOI:10.1101/gad.13.2.176
Reference
  Authors
Taylor SS
  Title
Chromosome segregation: dual control ensures fidelity.
  Journal
Curr Biol 9:R562-4 (1999)
DOI:10.1016/S0960-9822(99)80355-8
Reference
  Authors
Lew DJ, Burke DJ
  Title
The spindle assembly and spindle position checkpoints.
  Journal
Annu Rev Genet 37:251-82 (2003)
DOI:10.1146/annurev.genet.37.042203.120656
Reference
  Authors
Simanis V
  Title
Events at the end of mitosis in the budding and fission yeasts.
  Journal
J Cell Sci 116:4263-75 (2003)
DOI:10.1242/jcs.00807
Reference
PMID:8131744
  Authors
Toyn JH, Johnston LH
  Title
The Dbf2 and Dbf20 protein kinases of budding yeast are activated after the metaphase to anaphase cell cycle transition.
  Journal
EMBO J 13:1103-13 (1994)
DOI:10.1002/j.1460-2075.1994.tb06359.x
Reference
  Authors
Amon A
  Title
Together until separin do us part.
  Journal
Nat Cell Biol 3:E12-4 (2001)
DOI:10.1038/35050642
Reference
  Authors
Ciosk R, Shirayama M, Shevchenko A, Tanaka T, Toth A, Shevchenko A, Nasmyth K
  Title
Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins.
  Journal
Mol Cell 5:243-54 (2000)
DOI:10.1016/S1097-2765(00)80420-7
Reference
  Authors
Freeman L, Aragon-Alcaide L, Strunnikov A
  Title
The condensin complex governs chromosome condensation and mitotic transmission of rDNA.
  Journal
J Cell Biol 149:811-24 (2000)
DOI:10.1083/jcb.149.4.811
Reference
  Authors
Fu Y, Pastushok L, Xiao W
  Title
DNA damage-induced gene expression in Saccharomyces cerevisiae.
  Journal
FEMS Microbiol Rev 32:908-26 (2008)
DOI:10.1111/j.1574-6976.2008.00126.x
Reference
  Authors
Friedel AM, Pike BL, Gasser SM
  Title
ATR/Mec1: coordinating fork stability and repair.
  Journal
Curr Opin Cell Biol 21:237-44 (2009)
DOI:10.1016/j.ceb.2009.01.017
Reference
  Authors
Chen SH, Zhou H
  Title
Reconstitution of Rad53 activation by Mec1 through adaptor protein Mrc1.
  Journal
J Biol Chem 284:18593-604 (2009)
DOI:10.1074/jbc.M109.018242
Reference
  Authors
Amon A
  Title
A decade of Cdc14--a personal perspective. Delivered on 9 July 2007 at the 32nd FEBS Congress in Vienna, Austria.
  Journal
FEBS J 275:5774-84 (2008)
DOI:10.1111/j.1742-4658.2008.06693.x
Related
pathway
tpf04120  Ubiquitin mediated proteolysis
KO pathway
ko04111   
LinkDB

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