KEGG   PATHWAY: tpra00630
Entry
tpra00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Trifolium pratense (red clover)
Class
Metabolism; Carbohydrate metabolism
Pathway map
tpra00630  Glyoxylate and dicarboxylate metabolism
tpra00630

Module
tpra_M00012  Glyoxylate cycle [PATH:tpra00630]
tpra_M00532  Photorespiration [PATH:tpra00630]
tpra_M00621  Glycine cleavage system [PATH:tpra00630]
Other DBs
GO: 0046487 0043648
Organism
Trifolium pratense (red clover) [GN:tpra]
Gene
123920280  isocitrate lyase 1 [KO:K01637] [EC:4.1.3.1 4.1.3.30]
123892960  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
123882062  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
123911377  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
123885816  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
123884259  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
123895777  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
123903023  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
123884257  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
123908701  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
123909054  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
123895313  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
123918093  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
123882239  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
123899964  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
123917191  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
123920304  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
123908006  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
123893094  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
123897459  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
123897509  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
123921710  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
123905873  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
123898378  peroxisomal (S)-2-hydroxy-acid oxidase isoform X1 [KO:K11517] [EC:1.1.3.15]
123914335  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
123914336  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
123914337  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
123899287  catalase [KO:K03781] [EC:1.11.1.6]
123891858  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
123891919  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
123892782  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
123895700  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
123898013  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
123900122  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
123883134  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
123894128  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
123902611  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
123889361  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
123889366  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
123888503  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
123898786  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
54614133  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
123907074  ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]
123910921  ribulose bisphosphate carboxylase small subunit, chloroplastic [KO:K01602] [EC:4.1.1.39]
123910922  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
123923206  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
123917299  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
123908296  glutamate--glyoxylate aminotransferase 2 isoform X1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
123893182  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
123920715  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
123897368  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
123912990  glutamine synthetase cytosolic isozyme isoform X1 [KO:K01915] [EC:6.3.1.2]
123913320  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
123920157  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
123910466  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
123910726  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
123896927  serine hydroxymethyltransferase 7 isoform X1 [KO:K00600] [EC:2.1.2.1]
123897899  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
123914215  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
123903748  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
123903753  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
123905595  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
123916861  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
123907850  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
123885318  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
123885417  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
123907229  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
123921189  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
123907686  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
123907922  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
123900979  glycine cleavage system H protein, mitochondrial [KO:K02437]
123897445  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
123906563  formate dehydrogenase 1, mitochondrial isoform X1 [KO:K00122] [EC:1.17.1.9]
123892670  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
123911391  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
123919757  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
123907891  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
tpra00010  Glycolysis / Gluconeogenesis
tpra00020  Citrate cycle (TCA cycle)
tpra00030  Pentose phosphate pathway
tpra00053  Ascorbate and aldarate metabolism
tpra00071  Fatty acid degradation
tpra00230  Purine metabolism
tpra00250  Alanine, aspartate and glutamate metabolism
tpra00260  Glycine, serine and threonine metabolism
tpra00620  Pyruvate metabolism
tpra00710  Carbon fixation by Calvin cycle
tpra00750  Vitamin B6 metabolism
tpra00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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