KEGG   PATHWAY: tre03030
Entry
tre03030                    Pathway                                
Name
DNA replication - Trichoderma reesei QM6a
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
tre03030  DNA replication
tre03030

Organism
Trichoderma reesei QM6a [GN:tre]
Gene
TRIREDRAFT_4265  hypothetical protein [KO:K03469] [EC:3.1.26.4]
TRIREDRAFT_71468  replication factor A-like protein [KO:K07466]
TRIREDRAFT_120486  proliferating cell nuclear antigen [KO:K04802]
TRIREDRAFT_61039  Rad27p/FEN-1 endonuclease-like protein [KO:K04799] [EC:3.1.-.-]
TRIREDRAFT_22881  DNA ligase [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
TRIREDRAFT_53105  polymerase [KO:K02320] [EC:2.7.7.7]
TRIREDRAFT_79187  hypothetical protein [KO:K02321]
TRIREDRAFT_121573  DNA primase, small subunit [KO:K02684] [EC:2.7.7.102]
TRIREDRAFT_66296  hypothetical protein [KO:K02685]
TRIREDRAFT_2095  DNA polymerase delta, catalytic subunit [KO:K02327] [EC:2.7.7.7]
TRIREDRAFT_102401  hypothetical protein [KO:K02328]
TRIREDRAFT_75069  hypothetical protein [KO:K03504]
TRIREDRAFT_61551  hypothetical protein [KO:K03505]
TRIREDRAFT_3779  DNA polymerase epsilon, catalytic subunit A [KO:K02324] [EC:2.7.7.7]
TRIREDRAFT_58184  hypothetical protein [KO:K02325] [EC:2.7.7.7]
TRIREDRAFT_108421  hypothetical protein [KO:K02326] [EC:2.7.7.7]
TRIREDRAFT_5899  hypothetical protein [KO:K02540] [EC:5.6.2.3]
TRIREDRAFT_112463  hypothetical protein [KO:K02541] [EC:5.6.2.3]
TRIREDRAFT_73646  hypothetical protein [KO:K02212] [EC:5.6.2.3]
TRIREDRAFT_63454  hypothetical protein [KO:K02209] [EC:5.6.2.3]
TRIREDRAFT_75063  hypothetical protein [KO:K02542] [EC:5.6.2.3]
TRIREDRAFT_3212  hypothetical protein [KO:K02210] [EC:5.6.2.3]
TRIREDRAFT_55902  hypothetical protein [KO:K10739]
TRIREDRAFT_59964  hypothetical protein [KO:K10740]
TRIREDRAFT_25225  replication factor C, subunit 1-like protein [KO:K10754]
TRIREDRAFT_122392  hypothetical protein [KO:K10755]
TRIREDRAFT_44459  replication factor C subunit 4 [KO:K10755]
TRIREDRAFT_73778  replication factor C, subunit 5-like protein [KO:K10756]
TRIREDRAFT_61544  replication factor C, subunit 3 [KO:K10756]
TRIREDRAFT_75009  hypothetical protein [KO:K10743] [EC:3.1.26.4]
TRIREDRAFT_55039  hypothetical protein [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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