KEGG   PATHWAY: tsr04136
Entry
tsr04136                    Pathway                                
Name
Autophagy - other - Thamnophis sirtalis (common garter snake)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
tsr04136  Autophagy - other
tsr04136

Other DBs
GO: 0006914
Organism
Thamnophis sirtalis (common garter snake) [GN:tsr]
Gene
106545772  regulatory-associated protein of mTOR [KO:K07204]
106548093  MTOR; serine/threonine-protein kinase mTOR isoform X1 [KO:K07203] [EC:2.7.11.1]
106547543  MLST8; target of rapamycin complex subunit LST8 [KO:K08266]
106552220  ATG13; autophagy-related protein 13 [KO:K08331]
106556938  ATG101; autophagy-related protein 101 isoform X1 [KO:K19730]
106554095  IGBP1; immunoglobulin-binding protein 1 isoform X1 [KO:K17606]
106539819  PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [KO:K04382] [EC:3.1.3.16]
106539522  serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382] [EC:3.1.3.16]
106547377  ATG9A; autophagy-related protein 9A [KO:K17907]
106544792  autophagy-related protein 9B-like [KO:K17907]
106540466  ATG2B; autophagy-related protein 2 homolog B [KO:K17906]
106540552  autophagy-related protein 2 homolog A-like [KO:K17906]
106547888  WIPI1; WD repeat domain phosphoinositide-interacting protein 1 [KO:K17908]
106550794  WD repeat domain phosphoinositide-interacting protein 2-like [KO:K17908]
106540293  BECN1; LOW QUALITY PROTEIN: beclin-1 [KO:K08334]
106542713  PIK3C3; phosphatidylinositol 3-kinase catalytic subunit type 3 [KO:K00914] [EC:2.7.1.137]
106554370  phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform-like [KO:K00914] [EC:2.7.1.137]
106540295  PIK3R4; phosphoinositide 3-kinase regulatory subunit 4 [KO:K08333] [EC:2.7.11.1]
106545002  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
106546857  ATG5; autophagy protein 5 [KO:K08339]
106555287  ATG16L1; autophagy-related protein 16-1 isoform X1 [KO:K17890]
106548533  ATG7; ubiquitin-like modifier-activating enzyme ATG7 [KO:K08337]
106538768  ATG10; ubiquitin-like-conjugating enzyme ATG10 [KO:K17888]
106546534  ATG3; ubiquitin-like-conjugating enzyme ATG3 isoform X1 [KO:K08343]
106542412  GABARAP; gamma-aminobutyric acid receptor-associated protein [KO:K08341]
106539679  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
106544451  ATG4B; cysteine protease ATG4B [KO:K08342] [EC:3.4.22.-]
106552189  ATG4A; cysteine protease ATG4A [KO:K08342] [EC:3.4.22.-]
106556894  ATG4C; cysteine protease ATG4C [KO:K08342] [EC:3.4.22.-]
106539651  ATG4D; cysteine protease ATG4D [KO:K08342] [EC:3.4.22.-]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   
LinkDB

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