KEGG   PATHWAY: ttk00020
Entry
ttk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermosulfidibacter takaii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ttk00020  Citrate cycle (TCA cycle)
ttk00020

Module
ttk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ttk00020]
ttk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ttk00020]
ttk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ttk00020]
Other DBs
GO: 0006099
Organism
Thermosulfidibacter takaii [GN:ttk]
Gene
TST_0783  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
TST_1257  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TST_1016  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TST_0794  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TST_0890  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TST_0795  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TST_0889  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
TST_0796  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
TST_1015  4Fe-4S ferredoxin [KO:K00176] [EC:1.2.7.3]
TST_0793  korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
TST_0792  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
TST_0791  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
TST_0789  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
TST_0790  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
TST_0787  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
TST_0788  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
TST_0785  fumA; fumarate hydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
TST_0786  fumB; fumarate hydratase subunit beta [KO:K01678] [EC:4.2.1.2]
TST_0784  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TST_0008  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
TST_0999  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
TST_0018  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
TST_1001  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
TST_1073  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
TST_0019  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
TST_1074  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
TST_1002  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
TST_0016  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
TST_0766  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
TST_0017  porD; pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ttk00010  Glycolysis / Gluconeogenesis
ttk00053  Ascorbate and aldarate metabolism
ttk00061  Fatty acid biosynthesis
ttk00071  Fatty acid degradation
ttk00190  Oxidative phosphorylation
ttk00220  Arginine biosynthesis
ttk00250  Alanine, aspartate and glutamate metabolism
ttk00280  Valine, leucine and isoleucine degradation
ttk00350  Tyrosine metabolism
ttk00470  D-Amino acid metabolism
ttk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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