KEGG   PATHWAY: ttn00020
Entry
ttn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermoproteus tenax
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ttn00020  Citrate cycle (TCA cycle)
ttn00020

Module
ttn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ttn00020]
ttn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ttn00020]
ttn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ttn00020]
ttn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ttn00020]
Other DBs
GO: 0006099
Organism
Thermoproteus tenax [GN:ttn]
Gene
TTX_0497  cis1; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
TTX_1513  cis2; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
TTX_0493  acn; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TTX_1489  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TTX_0334  lpd-1; Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component [KO:K00382] [EC:1.8.1.4]
TTX_1455  oorCA; 2-oxoacid ferredoxin oxidoreductase, gamma-alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TTX_1758  oorCA; 2-oxoacid ferredoxin oxidoreductase, gamma-alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TTX_1454  oorB; 2-oxoacid ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TTX_1757  oorB; 2-oxoacid ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TTX_0922  sucD; succinyl-CoA synthetase, alpha chain [KO:K01902] [EC:6.2.1.5]
TTX_0921  sucC; succinyl-CoA synthetase, beta chain [KO:K01903] [EC:6.2.1.5]
TTX_1104  frdA; fumarate reductase (succinate dehydrogenase/fumarate reductase), flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
TTX_0864  sdhA_frdA; succinate dehydrogenase (succinate dehydrogenase/fumarate reductase), flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
TTX_1105  frdB; fumarate reductase (succinate dehydrogenase/fumarate reductase), iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
TTX_0863  sdhB_frdB; succinate dehydrogenase (succinate dehydrogenase/fumarate reductase), iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
TTX_0862  sdhC_frdC; succinate dehydrogenase (succinate dehydrogenase/fumarate reductase), cytochrome b subunit [KO:K00241]
TTX_0861  sdhD_frdD; succinate dehydrogenase (succinate dehydrogenase/fumarate reductase), subunit D [KO:K18860]
TTX_1765  fumA_ttdA; fumarate hydratase class I, N-terminal domain / tartrate dehydratase alpha subunit [KO:K01677] [EC:4.2.1.2]
TTX_1764  fumB_ttdB; fumarate hydratase class I, C-terminal domain / tartrate dehydratase beta subunit [KO:K01678] [EC:4.2.1.2]
TTX_1295  fumC; fumarate hydratase class II (fumarase) [KO:K01679] [EC:4.2.1.2]
TTX_1427  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TTX_1785  oorA; 2-oxoacid ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
TTX_0209  oorA; 2-oxoacid ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
TTX_2034  oorA; 2-oxoacid ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
TTX_0210  oorB; 2-oxoacid ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
TTX_2033  oorB; 2-oxoacid ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
TTX_1786  oorB; 2-oxoacid ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
TTX_2036  oorC; 2-oxoacid ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
TTX_1782  oorC; 2-oxoacid ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
TTX_2035  oorD; 2-oxoacid ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
TTX_1784  oorD; 2-oxoacid ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ttn00010  Glycolysis / Gluconeogenesis
ttn00061  Fatty acid biosynthesis
ttn00071  Fatty acid degradation
ttn00190  Oxidative phosphorylation
ttn00220  Arginine biosynthesis
ttn00250  Alanine, aspartate and glutamate metabolism
ttn00280  Valine, leucine and isoleucine degradation
ttn00350  Tyrosine metabolism
ttn00470  D-Amino acid metabolism
ttn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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