KEGG   PATHWAY: tvn03430
Entry
tvn03430                    Pathway                                
Name
Mismatch repair - Thermostichus vulcanus
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
tvn03430  Mismatch repair
tvn03430

Other DBs
GO: 0006298
Organism
Thermostichus vulcanus [GN:tvn]
Gene
NIES2134_121630  DNA mismatch repair protein [KO:K03555]
NIES2134_125350  mutS; DNA mismatch repair protein MutS [KO:K07456]
NIES2134_125290  mutL; DNA mismatch repair protein MutL [KO:K03572]
NIES2134_125210  pcrA; ATP-dependent helicase PcrA [KO:K03657] [EC:5.6.2.4]
NIES2134_100350  hypothetical protein [KO:K03657] [EC:5.6.2.4]
NIES2134_104570  recJ; single-strand-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
NIES2134_113830  putative single-strand DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
NIES2134_114210  ssb; single-stranded DNA-binding protein [KO:K03111]
NIES2134_122910  dnaE_2; DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
NIES2134_122780  dnaE_1; DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
NIES2134_124700  dnaN; DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
NIES2134_101390  DNA polymerase III gamma and tau subunits [KO:K02343] [EC:2.7.7.7]
NIES2134_114900  hypothetical protein [KO:K02340] [EC:2.7.7.7]
NIES2134_107860  dnaX; DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
NIES2134_110620  lig; DNA ligase [KO:K01972] [EC:6.5.1.2]
NIES2134_114950  putative adenine specific methyl transferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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