KEGG   PATHWAY: tvo00020
Entry
tvo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermoplasma volcanium
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tvo00020  Citrate cycle (TCA cycle)
tvo00020

Module
tvo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tvo00020]
tvo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tvo00020]
tvo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tvo00020]
tvo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tvo00020]
tvo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tvo00020]
Other DBs
GO: 0006099
Organism
Thermoplasma volcanium [GN:tvo]
Gene
TVG0252956  TVG0252956; citrate synthase [KO:K01647] [EC:2.3.3.1]
TVG0196114  TVG0196114; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
TVG0201218  TVG0201218; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TVG0102621  TVG0102621; pyruvate dehydrogenase E3 / dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TVG1458424  TVG1458424; pyruvate dehydrogenase E3 / dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TVG0881751  TVG0881751; 2-ketovalerate ferredoxin oxidoreductase [VOR] alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TVG1406112  TVG1406112; ferredoxin oxidoreductase [KOR] alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TVG0882664  TVG0882664; 2-ketovalerate ferredoxin oxidoreductase [VOR] beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TVG1405258  TVG1405258; ferredoxin oxidoreductase [KOR] beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TVG0284189  TVG0284189; succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
TVG0285047  TVG0285047; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
TVG0761794  TVG0761794; succinate dehydrogenase flavoprotein [KO:K00239] [EC:1.3.5.1]
TVG0761062  TVG0761062; succinate dehydrogenase iron sulfur subunit [KO:K00240] [EC:1.3.5.1]
TVG0760633  TVG0760633; succinate dehydrogenase cytochrome b subunit [KO:K00241]
TVG0760262  TVG0760262; hypothetical protein [KO:K00242]
TVG1409429  TVG1409429; fumarase [KO:K01679] [EC:4.2.1.2]
TVG1151701  TVG1151701; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TVG0204657  TVG0204657; phosphoenolpyrvate carboxykinase [KO:K01596] [EC:4.1.1.32]
TVG0106097  TVG0106097; 2-oxoisovalerate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
TVG0105141  TVG0105141; pyruvate dehydrogenase E1/pyruvate decarboxylase [KO:K00162] [EC:1.2.4.1]
TVG0103933  TVG0103933; pyruvate dehydrogenase E2 / dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
TVG0871982  TVG0871982; pyruvate ferredoxin oxidoreductasse [POR] alpha subunit [KO:K00169] [EC:1.2.7.1]
TVG0870514  TVG0870514; pyruvate ferredoxin oxidoreductasse [POR] gamma subunit [KO:K00172] [EC:1.2.7.1]
TVG0870807  TVG0870807; pyruvate ferredoxin oxidoreductasse [POR] delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tvo00010  Glycolysis / Gluconeogenesis
tvo00061  Fatty acid biosynthesis
tvo00071  Fatty acid degradation
tvo00190  Oxidative phosphorylation
tvo00220  Arginine biosynthesis
tvo00250  Alanine, aspartate and glutamate metabolism
tvo00280  Valine, leucine and isoleucine degradation
tvo00350  Tyrosine metabolism
tvo00470  D-Amino acid metabolism
tvo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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