KEGG   PATHWAY: twl00630
Entry
twl00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Tripterygium wilfordii (thunder duke vine)
Class
Metabolism; Carbohydrate metabolism
Pathway map
twl00630  Glyoxylate and dicarboxylate metabolism
twl00630

Module
twl_M00012  Glyoxylate cycle [PATH:twl00630]
twl_M00621  Glycine cleavage system [PATH:twl00630]
Other DBs
GO: 0046487 0043648
Organism
Tripterygium wilfordii (thunder duke vine) [GN:twl]
Gene
120000940  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
119991312  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
119993640  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
119999231  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
119985367  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
120012362  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
120014536  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
119984746  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
120011834  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
119989032  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
119980912  malate dehydrogenase, chloroplastic-like isoform X1 [KO:K00026] [EC:1.1.1.37]
120016968  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
119982237  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
119986259  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
120002013  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
120015053  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
119984604  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
119999839  aconitate hydratase 1-like [KO:K01681] [EC:4.2.1.3]
120000080  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
120012880  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
119991200  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
119991624  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
120006424  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
120006968  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
120014684  peroxisomal (S)-2-hydroxy-acid oxidase-like [KO:K11517] [EC:1.1.3.15]
119982516  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
119982517  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
119985271  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
120011043  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
120000317  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
120009036  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
119987401  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
120016058  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
119981777  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
119983023  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
119984008  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
120007447  glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
119999607  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
119999815  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
120001635  glyoxylate/succinic semialdehyde reductase 2, chloroplastic isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
120002736  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
120004910  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
120007068  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
120012819  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
119992640  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
119998483  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
120002008  serine--glyoxylate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
119990708  serine--glyoxylate aminotransferase-like isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
119999892  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
119992974  ferredoxin-dependent glutamate synthase, chloroplastic-like isoform X1 [KO:K00284] [EC:1.4.7.1]
119998497  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
120012169  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
120014708  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
119980325  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
119993949  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
119995489  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
119998185  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
120011379  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
119988562  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
120000869  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
120015457  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
119982527  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
119983365  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
120006709  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
120009515  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
119998347  serine hydroxymethyltransferase, mitochondrial isoform X1 [KO:K00600] [EC:2.1.2.1]
120010089  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
119993568  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
119997300  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
119987618  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
120005532  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
120012986  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
120013589  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
120014412  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
120014718  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
119987347  glycine cleavage system H protein 3, mitochondrial-like [KO:K02437]
119988299  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
119988874  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
120017258  glycine cleavage system H protein 3, mitochondrial-like [KO:K02437]
120010965  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
120009422  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
119987287  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
120016134  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
120015530  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
120003903  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
119984059  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
twl00010  Glycolysis / Gluconeogenesis
twl00020  Citrate cycle (TCA cycle)
twl00030  Pentose phosphate pathway
twl00053  Ascorbate and aldarate metabolism
twl00071  Fatty acid degradation
twl00230  Purine metabolism
twl00250  Alanine, aspartate and glutamate metabolism
twl00260  Glycine, serine and threonine metabolism
twl00620  Pyruvate metabolism
twl00710  Carbon fixation by Calvin cycle
twl00750  Vitamin B6 metabolism
twl00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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