KEGG   PATHWAY: upv00630
Entry
upv00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Undibacterium parvum
Class
Metabolism; Carbohydrate metabolism
Pathway map
upv00630  Glyoxylate and dicarboxylate metabolism
upv00630

Module
upv_M00012  Glyoxylate cycle [PATH:upv00630]
upv_M00621  Glycine cleavage system [PATH:upv00630]
Other DBs
GO: 0046487 0043648
Organism
Undibacterium parvum [GN:upv]
Gene
EJN92_07685  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
EJN92_18075  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
EJN92_18775  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EJN92_01730  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EJN92_17270  malate synthase A [KO:K01638] [EC:2.3.3.9]
EJN92_18500  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EJN92_18535  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EJN92_06380  citrate synthase [KO:K01647] [EC:2.3.3.1]
EJN92_07580  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EJN92_11110  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EJN92_20135  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EJN92_08310  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EJN92_08450  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EJN92_16820  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
EJN92_00200  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
EJN92_05720  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
EJN92_05715  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
EJN92_05710  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
EJN92_08225  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
EJN92_20710  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
EJN92_12435  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
EJN92_18880  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
EJN92_19915  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJN92_20310  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJN92_19125  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJN92_19135  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
EJN92_19175  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJN92_04445  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
EJN92_03335  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
EJN92_03345  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
EJN92_01035  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJN92_18555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJN92_03340  gcvH; glycine cleavage system protein GcvH [KO:K02437]
EJN92_12485  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
EJN92_07490  glycerate kinase [KO:K11529] [EC:2.7.1.165]
EJN92_02850  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
EJN92_04550  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
EJN92_14375  twin-arginine translocation signal domain-containing protein [KO:K00123] [EC:1.17.1.9]
EJN92_04545  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
EJN92_14380  4Fe-4S dicluster domain-containing protein [KO:K00124]
EJN92_14390  formate dehydrogenase subunit gamma [KO:K00127]
EJN92_21055  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
EJN92_13195  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
EJN92_18470  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EJN92_11510  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
upv00010  Glycolysis / Gluconeogenesis
upv00020  Citrate cycle (TCA cycle)
upv00030  Pentose phosphate pathway
upv00071  Fatty acid degradation
upv00230  Purine metabolism
upv00250  Alanine, aspartate and glutamate metabolism
upv00260  Glycine, serine and threonine metabolism
upv00620  Pyruvate metabolism
upv00710  Carbon fixation by Calvin cycle
upv00750  Vitamin B6 metabolism
upv00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system