KEGG   PATHWAY: vdb05111
Entry
vdb05111                    Pathway                                
Name
Biofilm formation - Vibrio cholerae - Vibrio diabolicus
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. On the other hand, biofilm formation is an energetically costly process and therefore must be tightly regulated and plastic, enabling biofilm bacteria to be responsive to the various environmental cues. The quorum sensing (QS) pathway of Vibrio cholerae activates the expression of VpsR, VpsT and AphA (the main activators of biofilm formation) at low cell density and HapR (the main repressor) at high cell density. At low cell density, biofilm genes, including Vibrio polysaccharide (VPS) biosynthesis genes and the major extracellular matrix genes RbmA, RbmC, and Bap1, are expressed. The QS pathway also leads to induction of virulence factors such as toxin coregulated pilus (TCP) and cholera toxin (CTX), essential for colonization of the host and enterotoxicity, respectively. The VarS/VarA signaling system responds to an unknown environmental cue and represses biofilm production by process which involves the regulatory sRNAs CsrB, CsrC and CsrD and the RNA-binding protein CsrA, interfering with LuxO of the QS pathway. The second messenger cAMP acts as a repressor of biofilm formation. cAMP is generated by adenylate cyclase CyaA, and in complex with cAMP receptor protein (CRP), this nucleotide has been shown to upregulate HapR production through the positive regulation of the CAI-I synthase CqsA and the negative regulation of Fis. The second messenger c-di-GMP is a key signalling molecule controlling motility and biofilm matrix production. High cellular levels of c-di-GMP promote enhanced transcription of genes involved in biofilm formation, possibly by promoting VpsT-mediated transcriptional activation of vps genes.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
vdb05111  Biofilm formation - Vibrio cholerae
vdb05111

Organism
Vibrio diabolicus [GN:vdb]
Gene
AL552_21325  S-ribosylhomocysteine lyase [KO:K07173] [EC:4.4.1.21]
AL552_05305  ATPase [KO:K10909] [EC:2.7.13.3 3.1.3.-]
AL552_05300  ABC transporter substrate-binding protein [KO:K10910]
AL552_06440  CAI-1 autoinducer synthase [KO:K10915] [EC:2.3.-.-]
AL552_06435  hybrid sensor histidine kinase/response regulator [KO:K10916] [EC:2.7.13.3 3.1.3.-]
AL552_19135  Hpt domain-containing protein [KO:K10911]
AL552_19140  sigma-54-dependent Fis family transcriptional regulator [KO:K10912]
AL552_22915  RNA-binding protein Hfq [KO:K03666]
AL552_22660  PadR family transcriptional regulator [KO:K10917]
AL552_19495  LysR family transcriptional regulator [KO:K10918]
AL552_04630  helix-turn-helix transcriptional regulator [KO:K20918]
AL552_10890  sigma-54-dependent Fis family transcriptional regulator [KO:K20919]
AL552_23055  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
AL552_01360  capsular biosynthesis protein [KO:K20920]
AL552_01365  capsular biosynthesis protein [KO:K20988]
AL552_01370  capsular biosynthesis protein [KO:K16554] [EC:2.7.10.3]
AL552_01405  antibiotic resistance protein VanZ [KO:K20950]
AL552_08935  gspC; type II secretion system protein GspC [KO:K02452]
AL552_08940  gspD; type II secretion system protein GspD [KO:K02453]
AL552_09460  general secretion pathway protein GspD [KO:K02453]
AL552_08945  gspE; type II secretion system protein GspE [KO:K02454] [EC:7.4.2.8]
AL552_09445  type II secretion system protein GspE [KO:K02454] [EC:7.4.2.8]
AL552_08950  gspF; type II secretion system protein GspF [KO:K02455]
AL552_09450  secretion system protein [KO:K02455]
AL552_08955  gspG; type II secretion system protein GspG [KO:K02456]
AL552_09440  gspG; type II secretion system protein GspG [KO:K02456]
AL552_08960  gspH; type II secretion system protein GspH [KO:K02457]
AL552_08965  gspI; type II secretion system protein GspI [KO:K02458]
AL552_08975  general secretion pathway protein GspK [KO:K02460]
AL552_08980  gspL; type II secretion system protein GspL [KO:K02461]
AL552_08985  general secretion pathway protein GspM [KO:K02462]
AL552_08990  type II secretion system protein N [KO:K02463]
AL552_12490  transcriptional regulator [KO:K10921]
AL552_12485  transcriptional regulator [KO:K10922]
AL552_04400  porin [KO:K08720]
AL552_20990  porin [KO:K08720]
AL552_06385  organic solvent ABC transporter substrate-binding protein [KO:K10936]
AL552_21220  LuxR family transcriptional regulator [KO:K10913]
AL552_06510  peptidase [KO:K08604] [EC:3.4.24.25]
AL552_21535  two-component sensor histidine kinase BarA [KO:K07678] [EC:2.7.13.3]
AL552_15035  hybrid sensor histidine kinase/response regulator [KO:K07678] [EC:2.7.13.3]
AL552_18405  two-component system response regulator UvrY [KO:K07689]
AL552_21425  csrA; carbon storage regulator [KO:K03563]
AL552_12360  PTS glucose transporter subunit IIA [KO:K02777] [EC:2.7.1.-]
AL552_03535  PTS glucose transporter subunit IIBC [KO:K02779] [EC:2.7.1.199]
AL552_18855  PTS glucose transporter subunit IIBC [KO:K02779] [EC:2.7.1.199]
AL552_23980  class I adenylate cyclase [KO:K05851] [EC:4.6.1.1]
AL552_22810  cAMP-activated global transcriptional regulator CRP [KO:K10914]
AL552_18485  Crp/Fnr family transcriptional regulator [KO:K10914]
AL552_23290  Fis family transcriptional regulator [KO:K03557]
AL552_19025  diguanylate cyclase [KO:K20955] [EC:2.7.7.65]
AL552_02885  GGDEF domain-containing protein [KO:K20956] [EC:2.7.7.65]
AL552_13180  GGDEF domain-containing protein [KO:K20957] [EC:2.7.7.65]
AL552_16505  sensor domain-containing diguanylate cyclase [KO:K20959] [EC:2.7.7.65]
AL552_07060  sensor domain-containing phosphodiesterase [KO:K20962] [EC:3.1.4.52]
AL552_23905  histidine kinase [KO:K07181] [EC:3.1.4.52]
AL552_23940  sensor domain-containing phosphodiesterase [KO:K20964] [EC:3.1.4.52]
AL552_20875  c-di-GMP phosphodiesterase [KO:K20965] [EC:3.1.4.52]
AL552_22305  MSHA biogenesis protein MshE [KO:K12276]
AL552_06475  MSHA biogenesis protein MshA [KO:K10924]
AL552_22290  MSHA biogenesis protein MshA [KO:K10924]
AL552_22280  MSHA biogenesis protein MshC [KO:K10926]
AL552_22275  MSHA biogenesis protein MshD [KO:K10927]
AL552_19845  sigma-54-dependent Fis family transcriptional regulator [KO:K10941]
AL552_22155  RNA polymerase factor sigma-54 [KO:K03092]
AL552_21460  RNA polymerase sigma factor RpoS [KO:K03087]
AL552_19840  PAS domain-containing sensor histidine kinase [KO:K10942] [EC:2.7.13.3]
AL552_19835  sigma-54-dependent Fis family transcriptional regulator [KO:K10943]
AL552_04210  sigma-54-dependent Fis family transcriptional regulator [KO:K10943]
AL552_04125  FliA/WhiG family RNA polymerase sigma factor [KO:K02405]
AL552_19740  RNA polymerase sigma factor FliA [KO:K02405]
Compound
C00031  D-Glucose
C00044  GTP
C00092  D-Glucose 6-phosphate
C00575  3',5'-Cyclic AMP
C16421  AI-2
C16463  3',5'-Cyclic diGMP
C16640  CAI-1
C18076  5'-Phosphoguanylyl(3'->5')guanosine
Reference
  Authors
Teschler JK, Zamorano-Sanchez D, Utada AS, Warner CJ, Wong GC, Linington RG, Yildiz FH
  Title
Living in the matrix: assembly and control of Vibrio cholerae biofilms.
  Journal
Nat Rev Microbiol 13:255-68 (2015)
DOI:10.1038/nrmicro3433
Reference
  Authors
Dang H, Lovell CR
  Title
Microbial Surface Colonization and Biofilm Development in Marine Environments.
  Journal
Microbiol Mol Biol Rev 80:91-138 (2016)
DOI:10.1128/MMBR.00037-15
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
PMID:9371445
  Authors
Sandkvist M, Michel LO, Hough LP, Morales VM, Bagdasarian M, Koomey M, DiRita VJ, Bagdasarian M
  Title
General secretion pathway (eps) genes required for toxin secretion and outer membrane biogenesis in Vibrio cholerae.
  Journal
J Bacteriol 179:6994-7003 (1997)
DOI:10.1128/JB.179.22.6994-7003.1997
Reference
  Authors
Lenz DH, Miller MB, Zhu J, Kulkarni RV, Bassler BL
  Title
CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae.
  Journal
Mol Microbiol 58:1186-202 (2005)
DOI:10.1111/j.1365-2958.2005.04902.x
Reference
  Authors
Houot L, Watnick PI
  Title
A novel role for enzyme I of the Vibrio cholerae phosphoenolpyruvate phosphotransferase system in regulation of growth in a biofilm.
  Journal
J Bacteriol 190:311-20 (2008)
DOI:10.1128/JB.01410-07
Reference
  Authors
Liang W, Silva AJ, Benitez JA
  Title
The cyclic AMP receptor protein modulates colonial morphology in Vibrio cholerae.
  Journal
Appl Environ Microbiol 73:7482-7 (2007)
DOI:10.1128/AEM.01564-07
Reference
  Authors
Lenz DH, Bassler BL
  Title
The small nucleoid protein Fis is involved in Vibrio cholerae quorum sensing.
  Journal
Mol Microbiol 63:859-71 (2007)
DOI:10.1111/j.1365-2958.2006.05545.x
Related
pathway
vdb02024  Quorum sensing
vdb02040  Flagellar assembly
vdb03070  Bacterial secretion system
KO pathway
ko05111   
LinkDB

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