KEGG   PATHWAY: wna00020
Entry
wna00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Woronichinia naegeliana
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
wna00020  Citrate cycle (TCA cycle)
wna00020

Module
wna_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:wna00020]
wna_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:wna00020]
Other DBs
GO: 0006099
Organism
Woronichinia naegeliana [GN:wna]
Gene
KA717_27740  citrate synthase [KO:K01647] [EC:2.3.3.1]
KA717_37970  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KA717_13050  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KA717_01605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KA717_36230  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
KA717_36235  acetate--CoA ligase family protein [KO:K01903] [EC:6.2.1.5]
KA717_34845  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KA717_35645  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KA717_03540  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
KA717_30025  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KA717_18995  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KA717_16180  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KA717_30310  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KA717_33525  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
KA717_12180  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
wna00010  Glycolysis / Gluconeogenesis
wna00053  Ascorbate and aldarate metabolism
wna00061  Fatty acid biosynthesis
wna00071  Fatty acid degradation
wna00190  Oxidative phosphorylation
wna00220  Arginine biosynthesis
wna00250  Alanine, aspartate and glutamate metabolism
wna00280  Valine, leucine and isoleucine degradation
wna00350  Tyrosine metabolism
wna00470  D-Amino acid metabolism
wna00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system