KEGG   PATHWAY: wsu00020
Entry
wsu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Wolinella succinogenes
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
wsu00020  Citrate cycle (TCA cycle)
wsu00020

Module
wsu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:wsu00020]
wsu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:wsu00020]
Other DBs
GO: 0006099
Organism
Wolinella succinogenes [GN:wsu]
Gene
WS1453  GLTA; CITRATE SYNTHASE [KO:K01647] [EC:2.3.3.1]
WS1187  ACNB; ACONITATE HYDRATASE [KO:K01682] [EC:4.2.1.3 4.2.1.99]
WS1454  PUTATIVE ISOCITRATE DEHYDROGENASE [KO:K00031] [EC:1.1.1.42]
WS1068  SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [KO:K00174] [EC:1.2.7.3 1.2.7.11]
WS1069  SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [KO:K00175] [EC:1.2.7.3 1.2.7.11]
WS1070  SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [KO:K00177] [EC:1.2.7.3]
WS1067  SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [KO:K00176] [EC:1.2.7.3]
WS1066  SUCD; SUCCINYL-COA SYNTHETASE ALPHA CHAIN [KO:K01902] [EC:6.2.1.5]
WS1065  SUCC; SUCCINYL-COA SYNTHETASE BETA CHAIN [KO:K01903] [EC:6.2.1.5]
WS1921  SDHB; SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN [KO:K00240] [EC:1.3.5.1]
WS1922  sdhC; SUCCINATE DEHYDROGENASE SUBUNIT C [KO:K00241]
WS0831  FRDA; FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT [KO:K00233] [EC:1.3.5.1 7.1.1.12]
WS0830  FRDB; FUMARATE REDUCTASE IRON-SULFUR PROTEIN [KO:K25995] [EC:1.3.5.1 7.1.1.12]
WS0829  FRDC2; FRDC2 PROTEIN [KO:K25996]
WS0832  FRDC; FUMARATE REDUCTASE CYTOCHROME B SUBUNIT [KO:K25996]
WS1766  FUMB_ALPHA; FUMARATE HYDRATASE B, ALPHA SUBUNIT [KO:K01677] [EC:4.2.1.2]
WS1767  FUMB_BETA; FUMARATE HYDRATASE B, BETA SUBUNIT [KO:K01678] [EC:4.2.1.2]
WS1064  CITH; MALATE DEHYDROGENASE [KO:K00024] [EC:1.1.1.37]
WS0776  PUTATIVE MALATE:QUINONE OXIDOREDUCTASE OXIDOREDUCTASE PROTEIN) [KO:K00116] [EC:1.1.5.4]
WS1289  PYCA; PUTATIVE PYRUVATE CARBOXYLASE A SUBUNIT [KO:K01959] [EC:6.4.1.1]
WS0565  PUTATIVE TRANSCARBOXYLASE SUBUNIT [KO:K01960] [EC:6.4.1.1]
WS2130  PYRUVATE SYNTHASE ALPHA SUBUNIT [KO:K00169] [EC:1.2.7.1]
WS2128  PYRUVATE FERREDOXIN OXIDOREDUCTASE, BETA SUBUNIT [KO:K00170] [EC:1.2.7.1]
WS2132  PYRUVATE:FERREDOXIN OXIDOREDUCTASE GAMMA SUBUNIT [KO:K00172] [EC:1.2.7.1]
WS2131  PYRUVATE FERREDOXIN OXIDOREDUCTASE, DELTA SUBUNIT [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
wsu00010  Glycolysis / Gluconeogenesis
wsu00053  Ascorbate and aldarate metabolism
wsu00061  Fatty acid biosynthesis
wsu00190  Oxidative phosphorylation
wsu00220  Arginine biosynthesis
wsu00250  Alanine, aspartate and glutamate metabolism
wsu00280  Valine, leucine and isoleucine degradation
wsu00350  Tyrosine metabolism
wsu00470  D-Amino acid metabolism
wsu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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