KEGG   PATHWAY: xfs03430
Entry
xfs03430                    Pathway                                
Name
Mismatch repair - Xylella fastidiosa subsp. sandyi Ann-1
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
xfs03430  Mismatch repair
xfs03430

Other DBs
GO: 0006298
Organism
Xylella fastidiosa subsp. sandyi Ann-1 [GN:xfs]
Gene
D934_07210  DNA mismatch repair protein MutS [KO:K03555]
D934_13330  mutL; DNA mismatch repair protein MutL [KO:K03572]
D934_01115  DNA helicase II [KO:K03657] [EC:5.6.2.4]
D934_10025  sbcB; exonuclease I [KO:K01141] [EC:3.1.11.1]
D934_13350  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
D934_11660  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
D934_03125  ssDNA exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
D934_08875  single-stranded DNA-binding protein [KO:K03111]
D934_04630  single-stranded DNA-binding protein [KO:K03111]
D934_07655  single-stranded DNA-binding protein [KO:K03111]
D934_08355  single-stranded DNA-binding protein [KO:K03111]
D934_06455  single-stranded DNA-binding protein [KO:K03111]
D934_12265  single-stranded DNA-binding protein [KO:K03111]
D934_01830  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
D934_00920  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
D934_07355  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
D934_12630  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
D934_11580  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
D934_12565  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
D934_01495  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
D934_13560  NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
D934_09105  restriction endonuclease subunit M [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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