KEGG   PATHWAY: ypw02010
Entry
ypw02010                    Pathway                                
Name
ABC transporters - Yersinia pestis PBM19
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
ypw02010  ABC transporters
ypw02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Yersinia pestis PBM19 [GN:ypw]
Gene
CH59_3053  sulfate ABC transporter, sulfate-binding family protein [KO:K02048]
CH59_2173  sulfate ABC transporter, sulfate-binding family protein [KO:K23163]
CH59_3054  cysT; sulfate ABC transporter, permease protein CysT [KO:K02046]
CH59_3055  cysW; sulfate ABC transporter, permease protein CysW [KO:K02047]
CH59_3056  cysA; sulfate ABC transporter, ATP-binding family protein [KO:K02045] [EC:7.3.2.3]
CH59_2274  tauA; taurine ABC transporter, periplasmic binding protein [KO:K15551]
CH59_2276  binding--dependent transport system inner membrane component family protein [KO:K15552]
CH59_2275  ABC transporter family protein [KO:K10831] [EC:7.6.2.7]
CH59_2379  putative aliphatic sulfonates-binding protein [KO:K15553]
CH59_2381  binding--dependent transport system inner membrane component family protein [KO:K15554]
CH59_2382  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
CH59_2174  bacterial extracellular solute-binding family protein [KO:K02020]
CH59_701  modA; molybdate ABC transporter, periplasmic molybdate-binding protein [KO:K02020]
CH59_700  modB; molybdate ABC transporter, permease protein [KO:K02018]
CH59_699  modC; molybdate ABC transporter, ATP-binding protein [KO:K02017] [EC:7.3.2.5]
CH59_704  ABC transporter family protein [KO:K05776]
CH59_3117  yfuA; yfuA [KO:K02012]
CH59_3017  bacterial extracellular solute-binding family protein [KO:K02012]
CH59_3020  bacterial extracellular solute-binding family protein [KO:K02012]
CH59_3116  binding--dependent transport system inner membrane component family protein [KO:K02011]
CH59_3021  binding--dependent transport system inner membrane component family protein [KO:K02011]
CH59_3115  ABC transporter family protein [KO:K02010] [EC:7.2.2.7]
CH59_3022  ABC transporter family protein [KO:K02010] [EC:7.2.2.7]
CH59_1338  thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein [KO:K02064]
CH59_1339  thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein [KO:K02063]
CH59_1340  thiQ; thiamine ABC transporter, ATP-binding protein [KO:K02062] [EC:7.6.2.15]
CH59_513  potF; putrescine-binding periplasmic protein [KO:K11073]
CH59_510  binding--dependent transport system inner membrane component family protein [KO:K11074]
CH59_511  potH; putrescine transport system permease protein PotH [KO:K11075]
CH59_512  polyamine ABC transporter, ATP-binding family protein [KO:K11076] [EC:7.6.2.16]
CH59_3524  substrate binding domain of ABC-type glycine betaine transport system family protein [KO:K02002]
CH59_3525  binding--dependent transport system inner membrane component family protein [KO:K02001]
CH59_3526  proV; glycine betaine/L-proline transport ATP binding subunit [KO:K02000] [EC:7.6.2.9]
CH59_644  binding--dependent transport system inner membrane component family protein [KO:K05846]
CH59_646  binding--dependent transport system inner membrane component family protein [KO:K05846]
CH59_645  ABC transporter family protein [KO:K05847] [EC:7.6.2.9]
CH59_1626  malE; maltose-binding periplasmic protein [KO:K10108]
CH59_1627  binding--dependent transport system inner membrane component family protein [KO:K10109]
CH59_1628  binding--dependent transport system inner membrane component family protein [KO:K10110]
CH59_1009  ABC transporter family protein [KO:K10111] [EC:7.5.2.-]
CH59_20  ABC transporter family protein [KO:K10111] [EC:7.5.2.-]
CH59_1624  malK; maltose/maltodextrin import ATP-binding protein MalK [KO:K10111] [EC:7.5.2.-]
CH59_3265  ABC transporter family protein [KO:K10111] [EC:7.5.2.-]
CH59_2577  ABC transporter family protein [KO:K10112] [EC:7.5.2.-]
CH59_1256  ABC transporter family protein [KO:K10112] [EC:7.5.2.-]
CH59_1010  bacterial extracellular solute-binding family protein [KO:K15770]
CH59_1011  binding--dependent transport system inner membrane component family protein [KO:K15771]
CH59_1012  binding--dependent transport system inner membrane component family protein [KO:K15772]
CH59_115  bacterial extracellular solute-binding family protein [KO:K10192]
CH59_112  binding--dependent transport system inner membrane component family protein [KO:K10193]
CH59_113  binding--dependent transport system inner membrane component family protein [KO:K10194]
CH59_114  ABC transporter family protein [KO:K10195]
CH59_2475  putative phospholipid-binding protein mlaC [KO:K07323]
CH59_2474  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
CH59_2473  putative phospholipid ABC transporter permease protein mlaE [KO:K02066]
CH59_2476  STAS domain protein [KO:K07122]
CH59_2472  ABC transporter family protein [KO:K02065]
CH59_38  periplasmic binding domain protein [KO:K10439]
CH59_906  periplasmic binding domain protein [KO:K10439]
CH59_1910  periplasmic binding domain protein [KO:K10439]
CH59_36  branched-chain amino acid transport system / permease component family protein [KO:K10440]
CH59_908  branched-chain amino acid transport system / permease component family protein [KO:K10440]
CH59_1911  branched-chain amino acid transport system / permease component family protein [KO:K10440]
CH59_37  ABC transporter family protein [KO:K10441] [EC:7.5.2.7]
CH59_907  ABC transporter family protein [KO:K10441] [EC:7.5.2.7]
CH59_1912  ABC transporter family protein [KO:K10441] [EC:7.5.2.7]
CH59_2097  rbsD / FucU transport family protein [KO:K06726] [EC:5.4.99.62]
CH59_3866  periplasmic binding domain protein [KO:K10537]
CH59_3864  branched-chain amino acid transport system / permease component family protein [KO:K10538]
CH59_3865  ABC transporter family protein [KO:K10539] [EC:7.5.2.12]
CH59_1849  ytfQ; ABC transporter periplasmic-binding protein ytfQ [KO:K23508]
CH59_1845  branched-chain amino acid transport system / permease component family protein [KO:K23509]
CH59_1847  branched-chain amino acid transport system / permease component family protein [KO:K23509]
CH59_1848  ccmA; heme ABC exporter, ATP-binding protein CcmA [KO:K10820] [EC:7.5.2.9]
CH59_331  mglB; D-galactose-binding periplasmic protein [KO:K10540]
CH59_329  branched-chain amino acid transport system / permease component family protein [KO:K10541]
CH59_330  ABC transporter family protein [KO:K10542] [EC:7.5.2.11]
CH59_1990  xylF; D-xylose ABC transporter, D-xylose-binding protein [KO:K10543]
CH59_1988  branched-chain amino acid transport system / permease component family protein [KO:K10544]
CH59_1989  ccmA; heme ABC exporter, ATP-binding protein CcmA [KO:K10545] [EC:7.5.2.10]
CH59_2731  periplasmic binding domain protein [KO:K17202]
CH59_2734  branched-chain amino acid transport system / permease component family protein [KO:K17203]
CH59_2733  ccmA; heme ABC exporter, ATP-binding protein CcmA [KO:K17204]
CH59_1006  periplasmic binding domain protein [KO:K17205]
CH59_1007  branched-chain amino acid transport system / permease component family protein [KO:K17206]
CH59_1008  ABC transporter family protein [KO:K17207]
CH59_3452  periplasmic binding domain protein [KO:K17208]
CH59_3455  branched-chain amino acid transport system / permease component family protein [KO:K17209]
CH59_1731  bacterial extracellular solute-binding family protein [KO:K05813]
CH59_1730  binding--dependent transport system inner membrane component family protein [KO:K05814]
CH59_1729  binding--dependent transport system inner membrane component family protein [KO:K05815]
CH59_1728  ugpC; sn-glycerol-3-phosphate import ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
CH59_2074  pstS; phosphate ABC transporter [KO:K02040]
CH59_2857  pstS; phosphate ABC transporter [KO:K02040]
CH59_2073  pstC; phosphate ABC transporter, permease protein PstC [KO:K02037]
CH59_3236  binding--dependent transport system inner membrane component family protein [KO:K02037]
CH59_2072  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CH59_3237  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CH59_2071  pstB; phosphate ABC transporter, ATP-binding protein [KO:K02036] [EC:7.3.2.1]
CH59_3238  pstB; phosphate ABC transporter, ATP-binding protein [KO:K02036] [EC:7.3.2.1]
CH59_660  phnD; phosphonate ABC transporter, periplasmic phosphonate binding protein [KO:K02044]
CH59_658  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
CH59_659  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
CH59_661  phnC; phosphonate ABC transporter, ATP-binding protein [KO:K02041] [EC:7.3.2.2]
CH59_3663  hisM; histidine transport system permease protein hisM [KO:K10015]
CH59_3662  amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K10016]
CH59_3664  ABC transporter family protein [KO:K10017] [EC:7.4.2.1]
CH59_3661  hisJ; histidine-binding periplasmic protein [KO:K10014]
CH59_49  bacterial extracellular solute-binding s, 3 family protein [KO:K10036]
CH59_50  amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K10037]
CH59_51  ABC transporter family protein [KO:K10038] [EC:7.4.2.1]
CH59_503  bacterial extracellular solute-binding s, 3 family protein [KO:K09996]
CH59_491  lysine-arginine-ornithine-binding periplasmic family protein [KO:K09997]
CH59_493  amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K09998]
CH59_492  amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K09999]
CH59_490  artP; arginine transport ATP-binding protein ArtP [KO:K10000] [EC:7.4.2.1]
CH59_3488  bacterial extracellular solute-binding s, 3 family protein [KO:K10001]
CH59_3486  amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K10002]
CH59_3487  amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K10003]
CH59_3485  ABC transporter family protein [KO:K10004] [EC:7.4.2.1]
CH59_3320  bacterial extracellular solute-binding s, 3 family protein [KO:K02424]
CH59_3319  yecS; inner membrane amino-acid ABC transporter permease protein yecS [KO:K10009]
CH59_3318  ABC transporter family protein [KO:K10010] [EC:7.4.2.1]
CH59_1743  receptor ligand binding region family protein [KO:K01999]
CH59_1742  livH; high-affinity branched-chain amino acid transport system permease protein livH [KO:K01997]
CH59_1741  branched-chain amino acid transport system / permease component family protein [KO:K01998]
CH59_1740  ABC transporter family protein [KO:K01995]
CH59_1739  livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF [KO:K01996]
CH59_526  NLPA lipofamily protein [KO:K02073]
CH59_787  metQ; D-methionine-binding lipoprotein metQ [KO:K02073]
CH59_524  binding--dependent transport system inner membrane component family protein [KO:K02072]
CH59_786  metI; D-methionine transport system permease protein metI [KO:K02072]
CH59_525  ABC transporter family protein [KO:K02071]
CH59_785  metN; D-methionine ABC transporter, ATP-binding protein [KO:K02071]
CH59_656  periplasmic binding domain protein [KO:K11959]
CH59_655  urtB; urea ABC transporter, permease protein UrtB [KO:K11960]
CH59_654  urtC; urea ABC transporter, permease protein UrtC [KO:K11961]
CH59_653  urtD; urea ABC transporter, ATP-binding protein UrtD [KO:K11962]
CH59_652  urtE; urea ABC transporter, ATP-binding protein UrtE [KO:K11963]
CH59_691  ABC transporter family protein [KO:K11963]
CH59_3938  oppA3; periplasmic oligopeptide-binding protein [KO:K15580]
CH59_4170  mppA; periplasmic murein peptide-binding protein [KO:K15580]
CH59_3937  oppB; oligopeptide transport system permease protein oppB [KO:K15581]
CH59_3936  oppC; oligopeptide transport system permease protein oppC [KO:K15582]
CH59_3935  hypothetical protein [KO:K15583]
CH59_3934  hypothetical protein [KO:K10823]
CH59_1951  bacterial extracellular solute-binding s, 5 Middle family protein [KO:K12368]
CH59_1950  binding--dependent transport system inner membrane component family protein [KO:K12369]
CH59_1949  binding--dependent transport system inner membrane component family protein [KO:K12370]
CH59_1948  hypothetical protein [KO:K12371]
CH59_1947  hypothetical protein [KO:K12372]
CH59_4186  bacterial extracellular solute-binding s, 5 Middle family protein [KO:K19226]
CH59_4187  sapB; peptide transport system permease protein sapB [KO:K19227]
CH59_4188  sapC; peptide transport system permease protein sapC [KO:K19228]
CH59_4189  hypothetical protein [KO:K19229]
CH59_4190  sapF; peptide transport system ATP-binding protein SapF [KO:K19230]
CH59_569  bacterial extracellular solute-binding s, 5 Middle family protein [KO:K13893]
CH59_570  yejB; inner membrane ABC transporter permease protein yejB [KO:K13894]
CH59_571  yejE; inner membrane ABC transporter permease protein yejE [KO:K13895]
CH59_572  nikE; nickel import ATP-binding protein NikE [KO:K13896]
CH59_1162  periplasmic binding family protein [KO:K23185]
CH59_302  periplasmic binding family protein [KO:K25286]
CH59_303  fecCD transport family protein [KO:K23186]
CH59_304  fecCD transport family protein [KO:K23187]
CH59_305  ABC transporter family protein [KO:K23188] [EC:7.2.2.17 7.2.2.-]
CH59_2657  periplasmic binding family protein [KO:K23227]
CH59_2658  fhuB; iron(3+)-hydroxamate import system permease protein fhuB [KO:K23228]
CH59_2656  fhuC; iron(3+)-hydroxamate import ATP-binding protein FhuC [KO:K10829] [EC:7.2.2.16]
CH59_2663  periplasmic binding family protein [KO:K06858]
CH59_4259  fecCD transport family protein [KO:K06073]
CH59_4257  ABC transporter family protein [KO:K06074] [EC:7.6.2.8]
CH59_4062  periplasmic solute binding family protein [KO:K09815]
CH59_4064  ABC 3 transport family protein [KO:K09816]
CH59_4063  ABC transporter family protein [KO:K09817] [EC:7.2.2.20]
CH59_4272  periplasmic solute binding family protein [KO:K11604]
CH59_4274  ABC 3 transport family protein [KO:K11605]
CH59_4275  ABC 3 transport family protein [KO:K11606]
CH59_4273  ABC transporter family protein [KO:K11607]
CH59_1452  lsrB; autoinducer 2-binding protein lsrB [KO:K10555]
CH59_1450  branched-chain amino acid transport system / permease component family protein [KO:K10556]
CH59_1451  branched-chain amino acid transport system / permease component family protein [KO:K10557]
CH59_1449  ccmA; heme ABC exporter, ATP-binding protein CcmA [KO:K10558]
CH59_209  lolE; liporeleasing system, transmembrane protein LolE [KO:K09808]
CH59_211  lolC; lipo-releasing system transmembrane protein lolC [KO:K09808]
CH59_210  lolD; liporeleasing system, ATP-binding protein [KO:K09810] [EC:7.6.2.-]
CH59_3624  ccmD; heme exporter protein CcmD [KO:K02196]
CH59_3623  ccmC; heme exporter CcmC family protein [KO:K02195]
CH59_3622  ccmB; heme exporter protein CcmB [KO:K02194]
CH59_3621  ccmA; heme ABC exporter, ATP-binding protein CcmA [KO:K02193] [EC:7.6.2.5]
CH59_2607  lptF; LPS export ABC transporter permease LptF [KO:K07091]
CH59_2608  lptG; LPS export ABC transporter permease LptG [KO:K11720]
CH59_2466  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
CH59_1747  ftsX; putative protein insertion permease FtsX [KO:K09811]
CH59_1748  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
CH59_1092  ABC transporter family protein [KO:K14698] [EC:7.-.-.-]
CH59_3707  ABC transporter family protein [KO:K14698] [EC:7.-.-.-]
CH59_1093  ABC transporter family protein [KO:K14699] [EC:7.-.-.-]
CH59_3708  ABC transporter family protein [KO:K14699] [EC:7.-.-.-]
CH59_445  msbA; lipid A export permease/ATP-binding protein MsbA [KO:K11085] [EC:7.5.2.6]
CH59_2916  ABC transporter family protein [KO:K18889]
CH59_2917  mdlB; multidrug resistance-like ATP-binding protein MdlB [KO:K18890]
CH59_2188  ABC transporter family protein [KO:K13409]
CH59_3461  ABC transporter family protein [KO:K24821]
CH59_1867  type I secretion system ATPase family protein [KO:K12536]
CH59_470  cydC; thiol reductant ABC exporter, CydC subunit [KO:K16012]
CH59_469  cydD; thiol reductant ABC exporter, CydD subunit [KO:K16013]
CH59_477  ABC transporter family protein [KO:K05685] [EC:7.6.2.-]
CH59_3068  ABC transporter family protein [KO:K05685] [EC:7.6.2.-]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
PMID:18424520
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
PMID:18375759
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