KEGG   PATHWAY: zab03008
Entry
zab03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Zonotrichia albicollis (white-throated sparrow)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
zab03008  Ribosome biogenesis in eukaryotes
zab03008

Organism
Zonotrichia albicollis (white-throated sparrow) [GN:zab]
Gene
102068459  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
102066146  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
102066380  NOL6; nucleolar protein 6 [KO:K14544]
102060868  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
102075369  WDR43; WD repeat-containing protein 43 [KO:K14546]
102068813  UTP15; U3 small nucleolar RNA-associated protein 15 homolog isoform X1 [KO:K14549]
102065646  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
102061723  WDR75; WD repeat-containing protein 75 [KO:K14552]
102060587  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
102061668  WDR36; WD repeat-containing protein 36 [KO:K14554]
102065178  TBL3; transducin beta-like protein 3 [KO:K14555]
102063238  WDR3; WD repeat-containing protein 3 [KO:K14556]
102071245  UTP6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
102070780  PWP2; periodic tryptophan protein 2 homolog [KO:K14558]
102071654  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
102074707  TCOF1; treacle protein isoform X1 [KO:K14562]
102067595  NOP58; nucleolar protein 58 [KO:K14565]
102069827  SNU13; NHP2-like protein 1 [KO:K12845]
102067006  DKC1; H/ACA ribonucleoprotein complex subunit DKC1 [KO:K11131] [EC:5.4.99.-]
102065889  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
102066756  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
102069217  FCF1; rRNA-processing protein FCF1 homolog [KO:K14566]
102060426  DROSHA; ribonuclease 3 isoform X2 [KO:K03685] [EC:3.1.26.3]
102071764  EMG1; ribosomal RNA small subunit methyltransferase NEP1 isoform X1 [KO:K14568] [EC:2.1.1.260]
102067587  BMS1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
102066031  NAT10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
102063245  RCL1; RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
102070449  POP1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
102074449  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
102075468  POP4; ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
106629769  POP5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
102069525  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
102073371  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
102068496  RPP30; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
102072932  RPP40; ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
102069284  REXO5; RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
102071797  REXO1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
102070795  REXO2; oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
102072782  XRN1; 5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
102062064  XRN2; 5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
102061362  GTPBP4; nucleolar GTP-binding protein 1 [KO:K06943]
102068644  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
102069579  GNL3; guanine nucleotide-binding protein-like 3 [KO:K14538]
102065277  NVL; nuclear valosin-containing protein-like isoform X1 [KO:K14571]
102073000  MDN1; midasin [KO:K14572]
102065008  RAN; GTP-binding nuclear protein Ran [KO:K07936]
102068691  XPO1; exportin-1 [KO:K14290]
102072380  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
102061829  NXT2; NTF2-related export protein 2 [KO:K14285]
102064961  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
102065608  SBDS; ribosome maturation protein SBDS [KO:K14574]
102074034  EFL1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
102067266  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
102068800  SPATA5; spermatogenesis-associated protein 5 isoform X1 [KO:K14575]
102062672  AK6; adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
102070758  RIOK1; serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
102061921  RIOK2; serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
zab03010  Ribosome
KO pathway
ko03008   
LinkDB

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