KEGG   PATHWAY: pcw03050
Entry
pcw03050                    Pathway                                
Name
Proteasome - Phascolarctos cinereus (koala)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pcw03050  Proteasome
pcw03050

Other DBs
GO: 0000502
Organism
Phascolarctos cinereus (koala) [GN:pcw]
Gene
110191995  PSMB5; LOW QUALITY PROTEIN: proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
110192082  PSMB11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
110192235  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 isoform X1 [KO:K03036]
110192987  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
110194403  PSMB6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
110194918  PSME1; proteasome activator complex subunit 1 [KO:K06696]
110194956  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
110195382  PSME2; proteasome activator complex subunit 2 [KO:K06697]
110195797  PSMA8; proteasome subunit alpha type-7-like isoform X1 [KO:K02731] [EC:3.4.25.1]
110196852  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
110197975  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
110198030  PSMD1; LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
110198450  PSME3; proteasome activator complex subunit 3 isoform X1 [KO:K06698]
110199328  [KO:K02741] [EC:3.4.25.1]
110199347  PSMB9; LOW QUALITY PROTEIN: proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
110199437  PSMB8; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
110199865  PSMC6; 26S protease regulatory subunit 10B [KO:K03064]
110200630  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
110201617  PSMC4; 26S protease regulatory subunit 6B [KO:K03063]
110202295  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
110202455  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
110203710  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
110205172  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
110205179  ADRM1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
110206371  PSMB2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
110206983  PSMC2; LOW QUALITY PROTEIN: 26S protease regulatory subunit 7 [KO:K03061]
110208415  PSMA3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
110210247  [KO:K03038]
110210388  PSMB10; proteasome subunit beta type-10 [KO:K02733] [EC:3.4.25.1]
110211092  IFNG; interferon gamma isoform X1 [KO:K04687]
110211389  PSMF1; proteasome inhibitor PI31 subunit isoform X1 [KO:K06700]
110211798  PSMA6; proteasome subunit alpha type-6 isoform X1 [KO:K02730] [EC:3.4.25.1]
110215054  PSME4; proteasome activator complex subunit 4 isoform X1 [KO:K06699]
110215603  POMP; proteasome maturation protein [KO:K11599]
110215691  PSMC5; 26S protease regulatory subunit 8 isoform X1 [KO:K03066]
110215856  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
110215914  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
110217633  SEM1; 26S proteasome complex subunit SEM1 [KO:K10881]
110217774  PSMC1; 26S protease regulatory subunit 4 [KO:K03062]
110218156  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
110218285  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 isoform X1 [KO:K03035]
110220733  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 isoform X1 [KO:K03030]
110220923  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
110221101  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
110221248  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
110224015  PSMC3; 26S protease regulatory subunit 6A isoform X1 [KO:K03065]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
pcw04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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