KEGG   PATHWAY: pcw04120
Entry
pcw04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Phascolarctos cinereus (koala)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pcw04120  Ubiquitin mediated proteolysis
pcw04120

Other DBs
GO: 0016567
Organism
Phascolarctos cinereus (koala) [GN:pcw]
Gene
110192031  UBE2J1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
110192335  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
110192459  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
110192620  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
110193069  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
110193123  DET1; DET1 homolog [KO:K10571]
110193233  [KO:K10580] [EC:2.3.2.23]
110193393  CUL4A; cullin-4A [KO:K10609]
110193407  CDC16; cell division cycle protein 16 homolog [KO:K03353]
110193688  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
110193738  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
110193843  [KO:K06688] [EC:2.3.2.23]
110193931  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
110194552  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
110195211  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
110195317  SYVN1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
110195387  DDB1; DNA damage-binding protein 1 [KO:K10610]
110196233  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
110196384  UBR5; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
110196723  WWP1; LOW QUALITY PROTEIN: NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
110196785  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
110196803  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
110197218  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
110197241  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
110197265  ELOC; elongin-C [KO:K03872]
110197268  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
110197300  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
110197303  UBE2E2; ubiquitin-conjugating enzyme E2 E2 isoform X1 [KO:K20217] [EC:2.3.2.23]
110197458  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
110197870  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
110198032  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
110198157  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
110198338  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
110198384  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
110198573  [KO:K06688] [EC:2.3.2.23]
110198848  UBE2G2; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
110199376  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
110199670  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
110200023  CUL4B; cullin-4B [KO:K10609]
110200027  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
110200195  CDC20; cell division cycle protein 20 homolog isoform X1 [KO:K03363]
110200231  AIRE; LOW QUALITY PROTEIN: autoimmune regulator [KO:K10603]
110200242  CUL3; cullin-3 [KO:K03869]
110200402  RHOBTB2; LOW QUALITY PROTEIN: rho-related BTB domain-containing protein 2 [KO:K07868]
110200616  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
110200703  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
110200954  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
110200996  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
110201037  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
110201672  CUL1; cullin-1 [KO:K03347]
110201690  [KO:K10580] [EC:2.3.2.23]
110202140  [KO:K06688] [EC:2.3.2.23]
110202280  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
110202358  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
110202437  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
110202659  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
110203120  FBXO2; F-box only protein 2 [KO:K10099]
110203647  [KO:K10585] [EC:2.3.2.23]
110203665  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
110203736  [KO:K10585] [EC:2.3.2.23]
110203831  [KO:K10585] [EC:2.3.2.23]
110204186  [KO:K10585] [EC:2.3.2.23]
110204522  [KO:K10585] [EC:2.3.2.23]
110204865  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
110205050  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
110205196  BIRC7; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 7 [KO:K16061]
110205265  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
110205743  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
110205825  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
110205866  [KO:K04694]
110206492  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
110206752  RFWD2; E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
110207188  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
110207221  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
110207389  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
110207457  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
110207973  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
110208197  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
110208624  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
110208677  [KO:K06688] [EC:2.3.2.23]
110208706  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
110209267  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
110209690  HERC3; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
110209784  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
110210248  WWP2; LOW QUALITY PROTEIN: NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
110210853  [KO:K02977]
110211045  MDM2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
110211238  CUL2; cullin-2 [KO:K03870]
110211359  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
110211516  [KO:K06688] [EC:2.3.2.23]
110211724  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
110211729  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
110211801  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
110211975  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
110212060  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
110212306  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
110212365  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
110212745  [KO:K10595] [EC:2.3.2.26]
110212750  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
110212979  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
110213651  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
110214069  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
110214081  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
110214232  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
110214590  ELOB; elongin-B [KO:K03873]
110214774  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
110214958  CUL5; cullin-5 [KO:K10612]
110215022  [KO:K16060]
110215023  [KO:K16060]
110215049  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
110215064  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
110215160  FBXO4; F-box only protein 4 [KO:K10291]
110215172  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
110215241  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 isoform X1 [KO:K10598] [EC:5.2.1.8]
110215703  MAP3K1; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
110215718  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
110215767  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
110216359  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
110216375  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
110216411  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
110216682  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
110216874  UBA7; LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
110217078  [KO:K10447]
110217419  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
110217499  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
110218198  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
110218278  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
110219220  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
110219385  UBE2O; LOW QUALITY PROTEIN: (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
110219827  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
110219948  PIAS3; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
110219970  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
110220405  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
110220799  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
110220918  CDC23; LOW QUALITY PROTEIN: cell division cycle protein 23 homolog [KO:K03355]
110221009  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
110221538  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
110221697  UBE2E3; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
110221751  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
110221949  UBE2I; SUMO-conjugating enzyme UBC9 isoform X1 [KO:K10577]
110221978  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
110222103  [KO:K08770]
110222308  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
110222518  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
110222765  UBE3B; LOW QUALITY PROTEIN: ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
110222777  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
110223040  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
110223171  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
110223399  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
110223437  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
110223910  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
110223919  DDB2; LOW QUALITY PROTEIN: DNA damage-binding protein 2 [KO:K10140]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pcw03050  Proteasome
KO pathway
ko04120   

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