KEGG   PATHWAY: pdf00030
Entry
pdf00030                    Pathway                                
Name
Pentose phosphate pathway - Clostridioides difficile 630Derm
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pdf00030  Pentose phosphate pathway
pdf00030

Module
pdf_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pdf00030]
pdf_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pdf00030]
Other DBs
GO: 0006098
Organism
Clostridioides difficile 630Derm [GN:pdf]
Gene
CD630DERM_32850  pgi; Glucose-6-phosphate isomerase (GPI)(Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase)(PHI) [KO:K01810] [EC:5.3.1.9]
CD630DERM_23190  rpe; putative ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
CD630DERM_25750  rpe1; Ribulose-phosphate 3-epimerase(Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) [KO:K01783] [EC:5.1.3.1]
CD630DERM_23210  tkt'; Transketolase, central and C-terminal(Sedoheptulose-7-phosphate:D-glyceraldehyde-3-ph osphateglycolaldehydetransferase) [KO:K00615] [EC:2.2.1.1]
CD630DERM_23220  tkt1; Transketolase, N-terminal(Sedoheptulose-7-phosphate:D-glyceraldehyde-3-ph osphateglycolaldehydetransferase) [KO:K00615] [EC:2.2.1.1]
CD630DERM_34590  tkt2; Transketolase, pyridine binding subunit [KO:K00615] [EC:2.2.1.1]
CD630DERM_34600  tkt3; Transketolase, thiamine diphosphate bindingsubunit [KO:K00615] [EC:2.2.1.1]
CD630DERM_23290  tal; Transaldolase [KO:K00616] [EC:2.2.1.2]
CD630DERM_23200  rpiB1; Ribose-5-phosphate isomerase B1(Phosphoriboisomerase B) [KO:K01808] [EC:5.3.1.6]
CD630DERM_34800  rpiB2; Ribose-5-phosphate isomerase 2 [KO:K01808] [EC:5.3.1.6]
CD630DERM_15020  deoC; Deoxyribose-phosphate aldolase(Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA) [KO:K01619] [EC:4.1.2.4]
CD630DERM_02990  rbsK; Ribokinase, pfkB family [KO:K00852] [EC:2.7.1.15]
CD630DERM_12230  drm; Phosphopentomutase (Phosphodeoxyribomutase) [KO:K01839] [EC:5.4.2.7]
CD630DERM_15770  pgm; Alpha-phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
CD630DERM_27800  pgmA; Alpha-phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
CD630DERM_35140  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
CD630DERM_36260  putative 4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CD630DERM_05800  gapN; Glyceraldehyde-3-phosphate dehydrogenase(NADP(+)) (GADPH) [KO:K00131] [EC:1.2.1.9]
CD630DERM_36400  putative ribokinase family sugar kinase [KO:K00874] [EC:2.7.1.45]
CD630DERM_02860  PTS system, mannose/fructose/sorbose IIAcomponent [KO:K17464] [EC:2.7.1.203]
CD630DERM_02870  PTS system, mannose/fructose/sorbose IIBcomponent [KO:K17465] [EC:2.7.1.203]
CD630DERM_04920  PTS system, mannose/fructose/sorbose IIBcomponent [KO:K17465] [EC:2.7.1.203]
CD630DERM_02880  PTS system, mannose/fructose/sorbose IICcomponent [KO:K17466]
CD630DERM_04930  PTS system, mannose/fructose/sorbose IICcomponent [KO:K17466]
CD630DERM_02890  PTS system, mannose/fructose/sorbose IIDcomponent [KO:K17467]
CD630DERM_31350  putative fructose-1-6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CD630DERM_04030  fba; Fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CD630DERM_11910  fbp; Fructose-1,6-bisphosphatase [KO:K04041] [EC:3.1.3.11]
CD630DERM_33950  pfkA; 6-phosphofructokinase (Phosphofructokinase)(Phosphohexokinase) [KO:K00850] [EC:2.7.1.11]
CD630DERM_31100  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pdf00010  Glycolysis / Gluconeogenesis
pdf00040  Pentose and glucuronate interconversions
pdf00052  Galactose metabolism
pdf00230  Purine metabolism
pdf00240  Pyrimidine metabolism
pdf00340  Histidine metabolism
pdf00630  Glyoxylate and dicarboxylate metabolism
pdf00750  Vitamin B6 metabolism
KO pathway
ko00030   
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