KEGG   PATHWAY: pgig03030
Entry
pgig03030                   Pathway                                
Name
DNA replication - Pteropus vampyrus (Indian flying fox)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
pgig03030  DNA replication
pgig03030

Organism
Pteropus vampyrus (Indian flying fox) [GN:pgig]
Gene
120583868  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
120584765  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
120584864  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
120586991  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
120587441  MCM7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
120589551  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
120590345  POLD3; DNA polymerase delta subunit 3 [KO:K03504]
120591153  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
120591714  RFC2; replication factor C subunit 2 isoform X1 [KO:K10755]
120592710  MCM4; DNA replication licensing factor MCM4 isoform X1 [KO:K02212] [EC:5.6.2.3]
120593044  RFC4; replication factor C subunit 4 isoform X1 [KO:K10755]
120594450  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
120594777  MCM3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
120594999  PRIM2; DNA primase large subunit isoform X1 [KO:K02685]
120595952  RPA2; replication protein A 32 kDa subunit [KO:K10739]
120596533  RNASEH1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
120597934  POLE2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
120599996  RPA4; LOW QUALITY PROTEIN: replication protein A 30 kDa subunit [KO:K10741]
120600652  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
120601073  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
120603423  PCNA; proliferating cell nuclear antigen [KO:K04802]
120604929  PRIM1; DNA primase small subunit isoform X1 [KO:K02684] [EC:2.7.7.102]
120605329  [KO:K10740]
120605818  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
120606764  RFC5; replication factor C subunit 5 [KO:K10756]
120606986  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
120609439  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
120610214  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
120610629  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
120611945  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
120614885  MCM5; LOW QUALITY PROTEIN: DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
120614986  RPA3; replication protein A 14 kDa subunit isoform X1 [KO:K10740]
120615569  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
120615961  POLE; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
120618533  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
120621046  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
120622699  [KO:K10739]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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