KEGG   PATHWAY: pog00020
Entry
pog00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pyrobaculum oguniense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pog00020  Citrate cycle (TCA cycle)
pog00020

Module
pog_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pog00020]
pog_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pog00020]
pog_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pog00020]
pog_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pog00020]
Other DBs
GO: 0006099
Organism
Pyrobaculum oguniense [GN:pog]
Gene
Pogu_2629  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Pogu_1250  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Pogu_1732  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Pogu_0288  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Pogu_1069  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pogu_2345  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Pogu_0972  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Pogu_2346  2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Pogu_0973  2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Pogu_0684  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Pogu_0685  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Pogu_2507  succinate dehydrogenase or fumarate reductase [KO:K00239] [EC:1.3.5.1]
Pogu_1300  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Pogu_2506  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Pogu_2505  Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
Pogu_2504  succinate dehydrogenase subunit D [KO:K18860]
Pogu_1505  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region [KO:K01677] [EC:4.2.1.2]
Pogu_1504  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region [KO:K01678] [EC:4.2.1.2]
Pogu_1833  Fumarase [KO:K01679] [EC:4.2.1.2]
Pogu_0643  Malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Pogu_1066  Pyruvate/2-oxoglutarate dehydrogenase, (E1) alpha [KO:K00161] [EC:1.2.4.1]
Pogu_1067  Pyruvate/2-oxoglutarate dehydrogenase, (E1) beta [KO:K00162] [EC:1.2.4.1]
Pogu_1068  Pyruvate/2-oxoglutarate dehydrogenase, dihydrolipoamide acyltransferase (E2) [KO:K00627] [EC:2.3.1.12]
Pogu_0428  Pyruvate:ferredoxin oxidoreductase-related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Pogu_2285  Pyruvate:ferredoxin oxidoreductase-related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Pogu_2284  Pyruvate:ferredoxin oxidoreductase-related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Pogu_0429  Pyruvate:ferredoxin oxidoreductase-related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Pogu_2287  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00172] [EC:1.2.7.1]
Pogu_0426  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00172] [EC:1.2.7.1]
Pogu_0427  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [KO:K00171] [EC:1.2.7.1]
Pogu_2286  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pog00010  Glycolysis / Gluconeogenesis
pog00061  Fatty acid biosynthesis
pog00071  Fatty acid degradation
pog00190  Oxidative phosphorylation
pog00220  Arginine biosynthesis
pog00250  Alanine, aspartate and glutamate metabolism
pog00280  Valine, leucine and isoleucine degradation
pog00350  Tyrosine metabolism
pog00470  D-Amino acid metabolism
pog00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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