KEGG   PATHWAY: pruf00534
Entry
pruf00534                   Pathway                                
Name
Glycosaminoglycan biosynthesis - heparan sulfate / heparin - Pyrgilauda ruficollis (rufous-necked snowfinch)
Description
Heparan sulfate (HS) and heparin (Hep) are glycosaminoglycans with repeating disaccharide units that consist of alternating residues of alpha-D-glucosamine (GlcN) and uronic acid, the latter being either beta-D-glucuronic acid (GlcA) or alpha-L-iduronic acid (IdoA). In these sugar residues, sulfation modification may be performed at various positions. Structural studies show that Hep possesses a higher degree of sulfation than HS. The biosynthesis of HS/Hep occurs with the addition of the first GlcNAc residue by EXTL3 glycosyltransferase after completion of tetrasaccharide linkage region attached to serine residue of a core protein. The chain polymeraization is then catalyzed by EXT1 and EXT2 transferases. As the chain polymerizes, HS/Hep undergoes a series of modification reactions including N-deacetylation, N-sulfation, epimerization, and subsequently O-sulfation. As final products of biosynthesis, HS is present in the form of hepran sulfate proteoglycan (HSPG) whereas Hep exists as a sugar chain without a core protein. The proteoglycan families with HS, as well as CS (chondroitin sulfate), DS (dermatan sulfate), and KS (keratan sulfate), are composed of two main types depending on the subcellular locations: cell membrane and extracellular matrix [BR:00535]. HS/Hep has been shown to bind to a variety of molecules, such as growth factors, chemokines, morphogens, and extracellular matrix components [BR:00536].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
pruf00534  Glycosaminoglycan biosynthesis - heparan sulfate / heparin
pruf00534

Module
pruf_M00059  Glycosaminoglycan biosynthesis, heparan sulfate backbone [PATH:pruf00534]
Other DBs
GO: 0030210
Organism
Pyrgilauda ruficollis (rufous-necked snowfinch) [GN:pruf]
Gene
121349162  NDST4; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [KO:K02579] [EC:3.5.1.- 2.8.2.8]
121349516  EXT2; exostosin-2 [KO:K02367] [EC:2.4.1.224 2.4.1.225]
121350280  [KO:K01024] [EC:2.8.2.23]
121350893  XYLT1; xylosyltransferase 1 [KO:K00771] [EC:2.4.2.26]
121351215  EXTL1; exostosin-like 1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
121353942  [KO:K02578] [EC:3.5.1.- 2.8.2.8]
121354191  [KO:K07809] [EC:2.8.2.30]
121354536  GLCE; D-glucuronyl C5-epimerase [KO:K01793] [EC:5.1.3.17]
121355356  EXT1; exostosin-1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
121358204  NDST2; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 [KO:K02577] [EC:3.5.1.- 2.8.2.8]
121358335  B3GALT6; beta-1,3-galactosyltransferase 6 [KO:K00734] [EC:2.4.1.134]
121358342  [KO:K00734] [EC:2.4.1.134]
121359255  HS3ST5; heparan sulfate glucosamine 3-O-sulfotransferase 5 [KO:K08104] [EC:2.8.2.23]
121359389  HS6ST3; heparan-sulfate 6-O-sulfotransferase 3 [KO:K08103] [EC:2.8.2.-]
121360869  EXTL3; exostosin-like 3 [KO:K02370] [EC:2.4.1.223 2.4.1.224]
121361325  NDST1; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 [KO:K02576] [EC:3.5.1.- 2.8.2.8]
121361478  B4GALT7; beta-1,4-galactosyltransferase 7 [KO:K00733] [EC:2.4.1.133]
121361996  HS2ST1; heparan sulfate 2-O-sulfotransferase 1 [KO:K02513] [EC:2.8.2.-]
121362194  EXTL2; exostosin-like 2 isoform X1 [KO:K02369] [EC:2.4.1.223]
121363197  HS6ST2; heparan-sulfate 6-O-sulfotransferase 2 [KO:K08102] [EC:2.8.2.-]
121363850  XYLT2; xylosyltransferase 2 [KO:K00771] [EC:2.4.2.26]
121364017  HS6ST1; heparan-sulfate 6-O-sulfotransferase 1 [KO:K02514] [EC:2.8.2.-]
121365834  HS3ST2; heparan sulfate glucosamine 3-O-sulfotransferase 2 [KO:K07808] [EC:2.8.2.29]
121365920  HS3ST1; heparan sulfate glucosamine 3-O-sulfotransferase 1 [KO:K01024] [EC:2.8.2.23]
Compound
C00033  Acetate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C02189  [Protein]-L-serine
G00154  
G00155  
G00156  
G00157  
G00162  
G00163  
G00164  
Reference
  Authors
Kim BT, Kitagawa H, Tamura J, Saito T, Kusche-Gullberg M, Lindahl U, Sugahara K
  Title
Human tumor suppressor EXT gene family members EXTL1 and EXTL3 encode alpha 1,4- N-acetylglucosaminyltransferases that likely are involved in heparan sulfate/ heparin biosynthesis.
  Journal
Proc Natl Acad Sci U S A 98:7176-81 (2001)
DOI:10.1073/pnas.131188498
Reference
  Authors
Kitagawa H, Shimakawa H, Sugahara K
  Title
The tumor suppressor EXT-like gene EXTL2 encodes an alpha1, 4-N-acetylhexosaminyltransferase that transfers N-acetylgalactosamine and N-acetylglucosamine to the common glycosaminoglycan-protein linkage region. The key enzyme for the chain initiation of heparan sulfate.
  Journal
J Biol Chem 274:13933-7 (1999)
DOI:10.1074/jbc.274.20.13933
Reference
PMID:9756849
  Authors
Lind T, Tufaro F, McCormick C, Lindahl U, Lidholt K
  Title
The putative tumor suppressors EXT1 and EXT2 are glycosyltransferases required for the biosynthesis of heparan sulfate.
  Journal
J Biol Chem 273:26265-8 (1998)
DOI:10.1074/jbc.273.41.26265
Reference
  Authors
Li JP, Gong F, El Darwish K, Jalkanen M, Lindahl U.
  Title
Characterization of the D-glucuronyl C5-epimerase involved in the biosynthesis of heparin and heparan sulfate.
  Journal
J Biol Chem 276:20069-77 (2001)
DOI:10.1074/jbc.M011783200
Reference
  Authors
Habuchi O
  Title
Diversity and functions of glycosaminoglycan sulfotransferases.
  Journal
Biochim Biophys Acta 1474:115-27 (2000)
DOI:10.1016/S0304-4165(00)00016-7
Reference
PMID:9151776
  Authors
Rosenberg RD, Shworak NW, Liu J, Schwartz JJ, Zhang L
  Title
Heparan sulfate proteoglycans of the cardiovascular system. Specific structures emerge but how is synthesis regulated?
  Journal
J Clin Invest 99:2062-70 (1997)
DOI:10.1172/JCI119377
Reference
PMID:9988768
  Authors
Liu J, Shworak NW, Sinay P, Schwartz JJ, Zhang L, Fritze LM, Rosenberg RD
  Title
Expression of heparan sulfate D-glucosaminyl 3-O-sulfotransferase isoforms reveals novel substrate specificities.
  Journal
J Biol Chem 274:5185-92 (1999)
DOI:10.1074/jbc.274.8.5185
Reference
  Authors
Shukla D, Liu J, Blaiklock P, Shworak NW, Bai X, Esko JD, Cohen GH, Eisenberg RJ, Rosenberg RD, Spear PG
  Title
A novel role for 3-O-sulfated heparan sulfate in herpes simplex virus 1 entry.
  Journal
Cell 99:13-22 (1999)
DOI:10.1016/S0092-8674(00)80058-6
Reference
  Authors
Moon AF, Edavettal SC, Krahn JM, Munoz EM, Negishi M, Linhardt RJ, Liu J, Pedersen LC
  Title
Structural analysis of the sulfotransferase (3-o-sulfotransferase isoform 3) involved in the biosynthesis of an entry receptor for herpes simplex virus 1.
  Journal
J Biol Chem 279:45185-93 (2004)
DOI:10.1074/jbc.M405013200
Reference
  Authors
Chen J, Liu J
  Title
Characterization of the structure of antithrombin-binding heparan sulfate generated by heparan sulfate 3-O-sulfotransferase 5.
  Journal
Biochim Biophys Acta 1725:190-200 (2005)
DOI:10.1016/j.bbagen.2005.06.012
Related
pathway
pruf00531  Glycosaminoglycan degradation
KO pathway
ko00534   

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