KEGG   PATHWAY: pseu00020
Entry
pseu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudanabaena sp. PCC 7367
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pseu00020  Citrate cycle (TCA cycle)
pseu00020

Module
pseu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pseu00020]
pseu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pseu00020]
pseu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pseu00020]
Other DBs
GO: 0006099
Organism
Pseudanabaena sp. PCC 7367 [GN:pseu]
Gene
Pse7367_2501  citrate synthase [KO:K01647] [EC:2.3.3.1]
Pse7367_2960  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Pse7367_0767  isocitrate dehydrogenase (NADP) [KO:K00030] [EC:1.1.1.41]
Pse7367_0892  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pse7367_0136  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Pse7367_2871  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Pse7367_2872  succinate dehydrogenase subunit C [KO:K00241]
Pse7367_1039  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Pse7367_0256  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Pse7367_1879  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Pse7367_0372  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Pse7367_1232  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
Pse7367_0465  catalytic domain-containing protein of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pseu00010  Glycolysis / Gluconeogenesis
pseu00053  Ascorbate and aldarate metabolism
pseu00061  Fatty acid biosynthesis
pseu00071  Fatty acid degradation
pseu00190  Oxidative phosphorylation
pseu00220  Arginine biosynthesis
pseu00250  Alanine, aspartate and glutamate metabolism
pseu00280  Valine, leucine and isoleucine degradation
pseu00350  Tyrosine metabolism
pseu00470  D-Amino acid metabolism
pseu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system