KEGG   PATHWAY: rhk00040
Entry
rhk00040                    Pathway                                
Name
Pentose and glucuronate interconversions - Rhizobium sp. Kim5
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhk00040  Pentose and glucuronate interconversions
rhk00040

Module
rhk_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:rhk00040]
Organism
Rhizobium sp. Kim5 [GN:rhk]
Gene
Kim5_PB00254  cupin 2 domain-containing protein [KO:K26933] [EC:4.2.99.25]
Kim5_PB00391  kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [KO:K01815] [EC:5.3.1.17]
Kim5_PB00390  kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [KO:K00065] [EC:1.1.1.127]
Kim5_CH00103  uxaC; glucuronate isomerase [KO:K01812] [EC:5.3.1.12]
Kim5_CH02170  mannonate dehydratase protein [KO:K01686] [EC:4.2.1.8]
Kim5_PD00294  uxuA; mannonate dehydratase [KO:K01686] [EC:4.2.1.8]
Kim5_CH00102  mannitol dehydrogenase protein [KO:K00040] [EC:1.1.1.57]
Kim5_CH03510  rkpK; UDP-glucose 6-dehydrogenase [KO:K00012] [EC:1.1.1.22]
Kim5_CH03903  exoN; UTP-glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
Kim5_PD00382  L-xylulose kinase protein [KO:K00880] [EC:2.7.1.53]
Kim5_CH02405  rpe; D-ribulose-5 phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Kim5_PD00101  L-fucose/L-arabinose isomerase protein [KO:K01804] [EC:5.3.1.4]
Kim5_CH04011  xylB; xylulose kinase [KO:K00854] [EC:2.7.1.17]
Kim5_CH02147  xylose isomerase domain-containing protein [KO:K01805] [EC:5.3.1.5]
Kim5_CH04010  xylA; xylose isomerase [KO:K01805] [EC:5.3.1.5]
Kim5_PB00278  L-rhamnose catabolism isomerase protein [KO:K01820] [EC:5.3.1.14 5.3.1.-]
Kim5_PB00249  D-xylulose reductase protein [KO:K05351] [EC:1.1.1.9]
Kim5_PB00159  Zn-dependent alcohol dehydrogenase GroES-like protein [KO:K05351] [EC:1.1.1.9]
Kim5_PA00501  Zn-dependent alcohol dehydrogenase GroES-like protein [KO:K00008] [EC:1.1.1.14]
Kim5_CH03622  ilvD-3; dihydroxy-acid dehydratase 3 [KO:K22186] [EC:4.2.1.82]
Kim5_CH03431  aldehyde dehydrogenase protein [KO:K22187] [EC:1.2.1.-]
Kim5_CH02959  FGGY family carbohydrate kinase protein [KO:K00875] [EC:2.7.1.47]
Kim5_CH04040  FGGY family carbohydrate kinase protein [KO:K00875] [EC:2.7.1.47]
Kim5_PB00156  rbtD-1; ribitol 2-dehydrogenase 1 [KO:K00039] [EC:1.1.1.56]
Kim5_PC00006  rbtD-2; ribitol 2-dehydrogenase 2 [KO:K00039] [EC:1.1.1.56]
Kim5_PD00642  rbtD-3; ribitol 2-dehydrogenase 3 [KO:K00039] [EC:1.1.1.56]
Compound
C00022  Pyruvate
C00026  2-Oxoglutarate
C00029  UDP-glucose
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00116  Glycerol
C00167  UDP-glucuronate
C00181  D-Xylose
C00191  D-Glucuronate
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00216  D-Arabinose
C00231  D-Xylulose 5-phosphate
C00259  L-Arabinose
C00266  Glycolaldehyde
C00309  D-Ribulose
C00310  D-Xylulose
C00312  L-Xylulose
C00333  D-Galacturonate
C00379  Xylitol
C00433  2,5-Dioxopentanoate
C00470  Pectate
C00474  Ribitol
C00476  D-Lyxose
C00502  D-Xylonate
C00508  L-Ribulose
C00514  D-Mannonate
C00532  L-Arabitol
C00558  D-Tagaturonate
C00618  3-Dehydro-L-gulonate
C00714  Pectin
C00789  CDP-ribitol
C00800  L-Gulonate
C00817  D-Altronate
C00905  D-Fructuronate
C01068  D-Ribitol 5-phosphate
C01101  L-Ribulose 5-phosphate
C01508  L-Lyxose
C01904  D-Arabitol
C02266  D-Xylonolactone
C02273  Digalacturonate
C02426  L-Glyceraldehyde
C02753  D-Xylono-1,4-lactone
C03033  beta-D-Glucuronoside
C03291  L-Xylulose 5-phosphate
C03826  2-Dehydro-3-deoxy-D-xylonate
C04053  5-Dehydro-4-deoxy-D-glucuronate
C04349  (4S)-4,6-Dihydroxy-2,5-dioxohexanoate
C04575  (4R,5S)-4,5,6-Trihydroxy-2,3-dioxohexanoate
C05385  D-Glucuronate 1-phosphate
C05411  L-Xylonate
C05412  L-Lyxonate
C06118  4-(4-Deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate
C06441  L-Xylulose 1-phosphate
C14899  3-Dehydro-L-gulonate 6-phosphate
C15930  L-Galactonate
C20680  2-Dehydro-3-deoxy-L-galactonate
C22337  D-Ribulose 1-phosphate
C22712  4-Deoxy-L-threo-hex-4-enopyranuronate
Reference
PMID:11741871
  Authors
Yew WS, Gerlt JA.
  Title
Utilization of L-ascorbate by Escherichia coli K-12: assignments of functions to products of the yjf-sga and yia-sgb operons.
  Journal
J Bacteriol 184:302-6 (2002)
DOI:10.1128/JB.184.1.302-306.2002
Reference
PMID:15697206
  Authors
Yew WS, Akana J, Wise EL, Rayment I, Gerlt JA
  Title
Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: enhancing the promiscuous D-arabino-hex-3-ulose 6-phosphate synthase reaction catalyzed by 3-keto-L-gulonate 6-phosphate decarboxylase.
  Journal
Biochemistry 44:1807-15 (2005)
DOI:10.1021/bi047815v
Reference
PMID:10572115
  Authors
Yasueda H, Kawahara Y, Sugimoto S.
  Title
Bacillus subtilis yckG and yckF encode two key enzymes of the ribulose monophosphate pathway used by methylotrophs, and yckH is required for their expression.
  Journal
J Bacteriol 181:7154-60 (1999)
DOI:10.1128/JB.181.23.7154-7160.1999
Reference
PMID:10913097
  Authors
Ibanez E, Gimenez R, Pedraza T, Baldoma L, Aguilar J, Badia J
  Title
Role of the yiaR and yiaS genes of Escherichia coli in metabolism of endogenously formed L-xylulose.
  Journal
J Bacteriol 182:4625-7 (2000)
DOI:10.1128/JB.182.16.4625-4627.2000
Reference
PMID:15901685
  Authors
Orita I, Yurimoto H, Hirai R, Kawarabayasi Y, Sakai Y, Kato N
  Title
The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway.
  Journal
J Bacteriol 187:3636-42 (2005)
DOI:10.1128/JB.187.11.3636-3642.2005
Related
pathway
rhk00010  Glycolysis / Gluconeogenesis
rhk00020  Citrate cycle (TCA cycle)
rhk00030  Pentose phosphate pathway
rhk00052  Galactose metabolism
rhk00053  Ascorbate and aldarate metabolism
rhk00500  Starch and sucrose metabolism
rhk00520  Amino sugar and nucleotide sugar metabolism
rhk00561  Glycerolipid metabolism
rhk00562  Inositol phosphate metabolism
rhk00740  Riboflavin metabolism
KO pathway
ko00040   
LinkDB

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