KEGG   PATHWAY: rhz02010
Entry
rhz02010                    Pathway                                
Name
ABC transporters - Rhodoplanes sp. Z2-YC6860
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
rhz02010  ABC transporters
rhz02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Rhodoplanes sp. Z2-YC6860 [GN:rhz]
Gene
RHPLAN_00230  [KO:K02066]
RHPLAN_00240  [KO:K02065]
RHPLAN_00250  [KO:K02067]
RHPLAN_02260  [KO:K01999]
RHPLAN_02270  [KO:K01997]
RHPLAN_02290  [KO:K01995]
RHPLAN_02300  [KO:K01996]
RHPLAN_03770  [KO:K06861] [EC:7.5.2.5]
RHPLAN_04800  [KO:K02196]
RHPLAN_04810  [KO:K02195]
RHPLAN_04820  [KO:K02194]
RHPLAN_04830  [KO:K02193] [EC:7.6.2.5]
RHPLAN_08560  [KO:K01999]
RHPLAN_08570  [KO:K01999]
RHPLAN_08830  [KO:K15553]
RHPLAN_09040  [KO:K15554]
RHPLAN_09050  [KO:K15555] [EC:7.6.2.14]
RHPLAN_09060  [KO:K15554]
RHPLAN_09080  [KO:K15553]
RHPLAN_09090  [KO:K15553]
RHPLAN_09970  [KO:K01999]
RHPLAN_09980  [KO:K01995]
RHPLAN_09990  [KO:K01996]
RHPLAN_10000  [KO:K01997]
RHPLAN_10010  [KO:K01998]
RHPLAN_10820  [KO:K02020]
RHPLAN_10880  [KO:K02020]
RHPLAN_11010  [KO:K02010] [EC:7.2.2.7]
RHPLAN_11020  [KO:K02012]
RHPLAN_11030  [KO:K02012]
RHPLAN_11040  [KO:K02012]
RHPLAN_11050  [KO:K02011]
RHPLAN_11530  [KO:K02471]
RHPLAN_12050  [KO:K09812]
RHPLAN_12060  [KO:K09811]
RHPLAN_12630  [KO:K02020]
RHPLAN_12920  [KO:K02041] [EC:7.3.2.2]
RHPLAN_12930  [KO:K02044]
RHPLAN_12940  [KO:K02042]
RHPLAN_13070  [KO:K12536]
RHPLAN_14080  [KO:K01995]
RHPLAN_14090  [KO:K01997]
RHPLAN_14100  [KO:K01998]
RHPLAN_14110  [KO:K01999]
RHPLAN_14120  [KO:K01996]
RHPLAN_14390  [KO:K02471]
RHPLAN_15010  [KO:K02020]
RHPLAN_16240  [KO:K09969]
RHPLAN_16600  [KO:K18893]
RHPLAN_17220  [KO:K02020]
RHPLAN_17730  [KO:K15553]
RHPLAN_18520  [KO:K02020]
RHPLAN_21320  [KO:K01999]
RHPLAN_21330  [KO:K01996]
RHPLAN_21340  [KO:K01998]
RHPLAN_21350  [KO:K01995]
RHPLAN_21360  [KO:K01997]
RHPLAN_22960  [KO:K12536]
RHPLAN_23080  [KO:K13893]
RHPLAN_25160  [KO:K02020]
RHPLAN_26750  [KO:K01999]
RHPLAN_26760  [KO:K01997]
RHPLAN_26770  [KO:K01998]
RHPLAN_26780  [KO:K01995]
RHPLAN_26790  [KO:K01996]
RHPLAN_27420  [KO:K01995]
RHPLAN_27430  [KO:K01998]
RHPLAN_27440  [KO:K01997]
RHPLAN_27450  [KO:K01999]
RHPLAN_27460  [KO:K01996]
RHPLAN_27650  [KO:K01996]
RHPLAN_27660  [KO:K01995]
RHPLAN_27670  [KO:K01998]
RHPLAN_27680  [KO:K01997]
RHPLAN_27690  [KO:K01999]
RHPLAN_28040  [KO:K01999]
RHPLAN_28050  [KO:K01997]
RHPLAN_28060  [KO:K01995 K01998]
RHPLAN_28070  [KO:K01996]
RHPLAN_28130  [KO:K01996]
RHPLAN_28140  [KO:K01995]
RHPLAN_28150  [KO:K01998]
RHPLAN_28160  [KO:K01997]
RHPLAN_28170  [KO:K01999]
RHPLAN_28250  [KO:K10112] [EC:7.5.2.-]
RHPLAN_28650  [KO:K01995]
RHPLAN_28660  [KO:K01996]
RHPLAN_28670  [KO:K01999]
RHPLAN_28680  [KO:K01999]
RHPLAN_28690  [KO:K01997]
RHPLAN_28700  [KO:K01998]
RHPLAN_29430  [KO:K15555] [EC:7.6.2.14]
RHPLAN_29440  [KO:K15553]
RHPLAN_29450  [KO:K15554]
RHPLAN_30380  [KO:K02010] [EC:7.2.2.7]
RHPLAN_30390  [KO:K02011]
RHPLAN_30400  [KO:K02012]
RHPLAN_31920  [KO:K24821]
RHPLAN_32060  [KO:K11073]
RHPLAN_32370  [KO:K01999]
RHPLAN_32380  [KO:K01999]
RHPLAN_32420  [KO:K01996]
RHPLAN_32430  [KO:K01995]
RHPLAN_32440  [KO:K01998]
RHPLAN_32450  [KO:K01997]
RHPLAN_33350  [KO:K01999]
RHPLAN_33560  [KO:K09969]
RHPLAN_33570  [KO:K09970]
RHPLAN_33580  [KO:K09971]
RHPLAN_33590  [KO:K09972] [EC:7.4.2.1]
RHPLAN_33970  [KO:K01999]
RHPLAN_33980  [KO:K01997]
RHPLAN_33990  [KO:K01998]
RHPLAN_34000  [KO:K01995]
RHPLAN_34010  [KO:K01996]
RHPLAN_34490  [KO:K02020]
RHPLAN_35270  [KO:K01996]
RHPLAN_35280  [KO:K01995]
RHPLAN_35290  [KO:K01997 K01998]
RHPLAN_35300  [KO:K01999]
RHPLAN_37140  [KO:K02020]
RHPLAN_38630  [KO:K15553]
RHPLAN_38950  [KO:K09808]
RHPLAN_38960  [KO:K09810] [EC:7.6.2.-]
RHPLAN_39930  [KO:K02020]
RHPLAN_39940  [KO:K02020]
RHPLAN_44790  [KO:K07091]
RHPLAN_44800  [KO:K11720]
RHPLAN_45670  [KO:K01999]
RHPLAN_45700  [KO:K01999]
RHPLAN_46010  [KO:K01999]
RHPLAN_46020  [KO:K01999]
RHPLAN_46030  [KO:K01997]
RHPLAN_46040  [KO:K01998]
RHPLAN_46050  [KO:K01995]
RHPLAN_46060  [KO:K01996]
RHPLAN_46170  [KO:K01996]
RHPLAN_46180  [KO:K01995]
RHPLAN_46190  [KO:K01998]
RHPLAN_46200  [KO:K01997]
RHPLAN_46210  [KO:K01999]
RHPLAN_46360  [KO:K02020]
RHPLAN_46980  [KO:K02040]
RHPLAN_47030  [KO:K23163]
RHPLAN_47410  [KO:K15555] [EC:7.6.2.14]
RHPLAN_48790  [KO:K01999]
RHPLAN_50710  [KO:K11085] [EC:7.5.2.6]
RHPLAN_50770  [KO:K01996]
RHPLAN_50780  [KO:K01995]
RHPLAN_50790  [KO:K01998]
RHPLAN_50800  [KO:K01997]
RHPLAN_50810  [KO:K01999]
RHPLAN_51010  [KO:K11963]
RHPLAN_51020  [KO:K11962]
RHPLAN_51030  [KO:K11961]
RHPLAN_51040  [KO:K11960]
RHPLAN_51050  [KO:K11959]
RHPLAN_53100  [KO:K12536]
RHPLAN_53320  [KO:K09691] [EC:7.5.2.14]
RHPLAN_53330  [KO:K09690]
RHPLAN_53700  [KO:K15576]
RHPLAN_53710  [KO:K15577]
RHPLAN_53720  [KO:K15578] [EC:7.3.2.4]
RHPLAN_54320  [KO:K02040]
RHPLAN_55140  [KO:K01999]
RHPLAN_55150  [KO:K01997]
RHPLAN_55160  [KO:K01998]
RHPLAN_55170  [KO:K01995]
RHPLAN_55180  [KO:K01996]
RHPLAN_55680  [KO:K01999]
RHPLAN_55690  [KO:K01997 K01998]
RHPLAN_55700  [KO:K01995]
RHPLAN_55710  [KO:K01996]
RHPLAN_55880  [KO:K11072] [EC:7.6.2.11]
RHPLAN_55890  [KO:K11069]
RHPLAN_55900  [KO:K11070]
RHPLAN_55910  [KO:K11071]
RHPLAN_55980  [KO:K11069]
RHPLAN_57290  [KO:K15553]
RHPLAN_57300  [KO:K15554]
RHPLAN_57320  [KO:K15555] [EC:7.6.2.14]
RHPLAN_57360  [KO:K02045] [EC:7.3.2.3]
RHPLAN_57370  [KO:K02047]
RHPLAN_57380  [KO:K02046]
RHPLAN_57390  [KO:K23163]
RHPLAN_58040  [KO:K01999]
RHPLAN_58550  [KO:K05847] [EC:7.6.2.9]
RHPLAN_58560  [KO:K05845 K05846]
RHPLAN_58600  [KO:K02020]
RHPLAN_58610  [KO:K02020]
RHPLAN_58620  [KO:K02020]
RHPLAN_58640  [KO:K11004]
RHPLAN_58970  [KO:K23537]
RHPLAN_58990  [KO:K23536]
RHPLAN_59000  [KO:K23535]
RHPLAN_59010  [KO:K07335]
RHPLAN_60070  [KO:K15578] [EC:7.3.2.4]
RHPLAN_60080  [KO:K15577]
RHPLAN_60090  [KO:K15576]
RHPLAN_60340  [KO:K01997]
RHPLAN_60350  [KO:K01998]
RHPLAN_60360  [KO:K01999]
RHPLAN_60370  [KO:K01995]
RHPLAN_60380  [KO:K01996]
RHPLAN_60390  [KO:K01999]
RHPLAN_60400  [KO:K01997]
RHPLAN_60410  [KO:K01998]
RHPLAN_60420  [KO:K01995]
RHPLAN_60430  [KO:K01996]
RHPLAN_60470  [KO:K01997]
RHPLAN_60480  [KO:K01998]
RHPLAN_60490  [KO:K01995]
RHPLAN_60500  [KO:K01996]
RHPLAN_60520  [KO:K01999]
RHPLAN_60860  [KO:K01996]
RHPLAN_60870  [KO:K01995]
RHPLAN_60880  [KO:K01998]
RHPLAN_60890  [KO:K01997]
RHPLAN_60900  [KO:K01999]
RHPLAN_61010  [KO:K02020]
RHPLAN_61560  [KO:K11074]
RHPLAN_61570  [KO:K11075]
RHPLAN_61580  [KO:K11076] [EC:7.6.2.16]
RHPLAN_61920  [KO:K02040]
RHPLAN_61960  [KO:K05685] [EC:7.6.2.-]
RHPLAN_64270  [KO:K02020]
RHPLAN_64300  [KO:K15553]
RHPLAN_64730  [KO:K02036] [EC:7.3.2.1]
RHPLAN_64740  [KO:K02038]
RHPLAN_64750  [KO:K02037]
RHPLAN_64760  [KO:K02040]
RHPLAN_65180  [KO:K02044]
RHPLAN_65190  [KO:K02044]
RHPLAN_65200  [KO:K02041] [EC:7.3.2.2]
RHPLAN_65210  [KO:K02042]
RHPLAN_65220  [KO:K02042]
RHPLAN_65570  [KO:K02020]
RHPLAN_67200  [KO:K13896]
RHPLAN_67210  [KO:K13895]
RHPLAN_67220  [KO:K13894]
RHPLAN_67230  [KO:K13893]
RHPLAN_67240  [KO:K13893]
RHPLAN_67780  [KO:K05772]
RHPLAN_67790  [KO:K06857] [EC:7.3.2.6]
RHPLAN_67800  [KO:K05773]
RHPLAN_67820  [KO:K02020]
RHPLAN_67830  [KO:K02020]
RHPLAN_67840  [KO:K02018]
RHPLAN_67850  [KO:K02017] [EC:7.3.2.5]
RHPLAN_68500  [KO:K02020]
RHPLAN_68940  [KO:K01999]
RHPLAN_68950  [KO:K01997]
RHPLAN_68960  [KO:K01998]
RHPLAN_68970  [KO:K01995]
RHPLAN_68980  [KO:K01996]
RHPLAN_69070  [KO:K10439]
RHPLAN_69080  [KO:K10440]
RHPLAN_69090  [KO:K10441] [EC:7.5.2.7]
RHPLAN_69740  [KO:K01999]
RHPLAN_69790  [KO:K01999]
RHPLAN_69800  [KO:K01997]
RHPLAN_69810  [KO:K01998]
RHPLAN_69820  [KO:K01995]
RHPLAN_69830  [KO:K01996]
RHPLAN_70390  [KO:K15554]
RHPLAN_70400  [KO:K15553]
RHPLAN_70410  [KO:K15555] [EC:7.6.2.14]
RHPLAN_70490  [KO:K01999]
RHPLAN_70500  [KO:K01997]
RHPLAN_70510  [KO:K01995 K01996 K01998]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

DBGET integrated database retrieval system