KEGG   PATHWAY: rlu00630
Entry
rlu00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium leguminosarum bv. trifolii CB782
Class
Metabolism; Carbohydrate metabolism
Pathway map
rlu00630  Glyoxylate and dicarboxylate metabolism
rlu00630

Module
rlu_M00012  Glyoxylate cycle [PATH:rlu00630]
rlu_M00621  Glycine cleavage system [PATH:rlu00630]
rlu_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rlu00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium leguminosarum bv. trifolii CB782 [GN:rlu]
Gene
RLEG12_13235  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RLEG12_29140  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
RLEG12_09890  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
RLEG12_31200  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
RLEG12_31540  malate synthase [KO:K01638] [EC:2.3.3.9]
RLEG12_29865  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RLEG12_20445  citrate synthase [KO:K01647] [EC:2.3.3.1]
RLEG12_20450  citrate synthase [KO:K01647] [EC:2.3.3.1]
RLEG12_19460  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
RLEG12_30205  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RLEG12_12395  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
RLEG12_30705  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RLEG12_05195  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RLEG12_06280  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RLEG12_30700  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
RLEG12_17465  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RLEG12_20680  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01965] [EC:6.4.1.3]
RLEG12_20710  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RLEG12_06835  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RLEG12_13640  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
RLEG12_13645  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
RLEG12_13650  2-hydroxy-acid oxidase [KO:K11473] [EC:1.1.99.14]
RLEG12_18480  catalase [KO:K03781] [EC:1.11.1.6]
RLEG12_32010  2-hydroxyacid dehydrogenase [KO:K00015] [EC:1.1.1.26]
RLEG12_08615  D-2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RLEG12_32230  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RLEG12_05275  D-2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RLEG12_09655  D-2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RLEG12_20725  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
RLEG12_21500  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RLEG12_13820  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
RLEG12_20005  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RLEG12_24280  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RLEG12_16105  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RLEG12_25450  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RLEG12_13195  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RLEG12_16930  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RLEG12_20770  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
RLEG12_20760  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
RLEG12_01975  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
RLEG12_02035  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
RLEG12_05220  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RLEG12_29810  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RLEG12_19520  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RLEG12_20765  glycine cleavage system protein H [KO:K02437]
RLEG12_26855  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RLEG12_26760  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RLEG12_18455  TtuD3 hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
RLEG12_08600  hypothetical protein [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RLEG12_11215  3-isopropylmalate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RLEG12_06310  3-isopropylmalate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RLEG12_28390  ketohydroxyglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RLEG12_29615  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
RLEG12_29625  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
RLEG12_29630  formate dehydrogenase subunit beta [KO:K00124]
RLEG12_29635  formate dehydrogenase subunit gamma [KO:K00127]
RLEG12_11145  esterase [KO:K01432] [EC:3.5.1.9]
RLEG12_01970  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RLEG12_32450  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RLEG12_03425  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rlu00010  Glycolysis / Gluconeogenesis
rlu00020  Citrate cycle (TCA cycle)
rlu00030  Pentose phosphate pathway
rlu00053  Ascorbate and aldarate metabolism
rlu00071  Fatty acid degradation
rlu00230  Purine metabolism
rlu00250  Alanine, aspartate and glutamate metabolism
rlu00260  Glycine, serine and threonine metabolism
rlu00620  Pyruvate metabolism
rlu00710  Carbon fixation by Calvin cycle
rlu00750  Vitamin B6 metabolism
rlu00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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