KEGG   PATHWAY: rup00030
Entry
rup00030                    Pathway                                
Name
Pentose phosphate pathway - Runella sp. SP2
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rup00030  Pentose phosphate pathway
rup00030

Module
rup_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rup00030]
rup_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rup00030]
rup_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:rup00030]
Other DBs
GO: 0006098
Organism
Runella sp. SP2 [GN:rup]
Gene
DTQ70_16735  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
DTQ70_21405  lactonase family protein [KO:K07404] [EC:3.1.1.31]
DTQ70_08760  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
DTQ70_08885  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
DTQ70_02195  transketolase family protein [KO:K00615] [EC:2.2.1.1]
DTQ70_02200  transketolase [KO:K00615] [EC:2.2.1.1]
DTQ70_04925  transketolase [KO:K00615] [EC:2.2.1.1]
DTQ70_04930  transketolase family protein [KO:K00615] [EC:2.2.1.1]
DTQ70_00715  transketolase [KO:K00615] [EC:2.2.1.1]
DTQ70_00745  transketolase [KO:K00615] [EC:2.2.1.1]
DTQ70_26675  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
DTQ70_28655  CBS domain-containing protein [KO:K00616] [EC:2.2.1.2]
DTQ70_09855  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
DTQ70_14500  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
DTQ70_08010  ribokinase [KO:K00852] [EC:2.7.1.15]
DTQ70_14900  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
DTQ70_21820  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
DTQ70_00330  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
DTQ70_21370  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
DTQ70_25145  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
DTQ70_25285  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
DTQ70_20060  pyrroloquinoline quinone-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
DTQ70_06580  pyrroloquinoline quinone-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
DTQ70_01465  heme-binding protein [KO:K00117] [EC:1.1.5.2]
DTQ70_07560  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
DTQ70_13375  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
DTQ70_12065  gluconolactonase [KO:K01053] [EC:3.1.1.17]
DTQ70_28785  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
DTQ70_08780  gluconokinase [KO:K25031] [EC:2.7.1.12]
DTQ70_15085  carbohydrate kinase [KO:K25031] [EC:2.7.1.12]
DTQ70_07290  sugar kinase [KO:K00874] [EC:2.7.1.45]
DTQ70_21365  sugar kinase [KO:K00874] [EC:2.7.1.45]
DTQ70_14950  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
DTQ70_12015  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
DTQ70_11235  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
DTQ70_15155  1-phosphofructokinase family hexose kinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
rup00010  Glycolysis / Gluconeogenesis
rup00040  Pentose and glucuronate interconversions
rup00052  Galactose metabolism
rup00230  Purine metabolism
rup00240  Pyrimidine metabolism
rup00340  Histidine metabolism
rup00630  Glyoxylate and dicarboxylate metabolism
rup00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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