KEGG   PATHWAY: sahs00020
Entry
sahs00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobales archaeon HS-7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sahs00020  Citrate cycle (TCA cycle)
sahs00020

Module
sahs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sahs00020]
sahs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sahs00020]
sahs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sahs00020]
sahs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sahs00020]
Other DBs
GO: 0006099
Organism
Sulfolobales archaeon HS-7 [GN:sahs]
Gene
HS7_02530  citrate synthase [KO:K01647] [EC:2.3.3.1]
HS7_10310  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
HS7_03960  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HS7_00440  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
HS7_09160  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
HS7_16080  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HS7_16140  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HS7_11080  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HS7_11070  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HS7_08700  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HS7_08710  succinate--CoA ligase [KO:K01903] [EC:6.2.1.5]
HS7_04970  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HS7_04980  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
HS7_04990  disulfide reductase [KO:K00241]
HS7_08620  hypothetical protein [KO:K18859]
HS7_09290  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HS7_02480  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HS7_16110  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HS7_16100  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HS7_16090  pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sahs00010  Glycolysis / Gluconeogenesis
sahs00053  Ascorbate and aldarate metabolism
sahs00061  Fatty acid biosynthesis
sahs00071  Fatty acid degradation
sahs00190  Oxidative phosphorylation
sahs00220  Arginine biosynthesis
sahs00250  Alanine, aspartate and glutamate metabolism
sahs00280  Valine, leucine and isoleucine degradation
sahs00350  Tyrosine metabolism
sahs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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