KEGG   PATHWAY: saqt00020
Entry
saqt00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurimonas aquatica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
saqt00020  Citrate cycle (TCA cycle)
saqt00020

Module
saqt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:saqt00020]
saqt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:saqt00020]
saqt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:saqt00020]
Other DBs
GO: 0006099
Organism
Sulfurimonas aquatica [GN:saqt]
Gene
GJV85_03305  citrate synthase [KO:K01647] [EC:2.3.3.1]
GJV85_09550  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
GJV85_09555  ATPase [KO:K15231] [EC:2.3.3.8]
GJV85_06735  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GJV85_06695  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GJV85_06675  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GJV85_06680  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GJV85_06140  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GJV85_06135  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GJV85_06130  heterodisulfide reductase subunit B [KO:K00241]
GJV85_04580  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
GJV85_04585  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
GJV85_04575  fumarate reductase cytochrome b subunit [KO:K25996]
GJV85_06685  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GJV85_06690  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GJV85_01220  FAD-dependent oxidoreductase [KO:K00116] [EC:1.1.5.4]
GJV85_10660  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
GJV85_05470  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
GJV85_10890  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GJV85_10640  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
GJV85_10740  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
GJV85_10765  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
GJV85_10965  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
GJV85_10635  ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
GJV85_10735  ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
GJV85_10760  ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
GJV85_10970  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
GJV85_10630  ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
GJV85_10730  ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
GJV85_10755  ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
GJV85_10955  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
GJV85_10960  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
GJV85_11305  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
saqt00010  Glycolysis / Gluconeogenesis
saqt00061  Fatty acid biosynthesis
saqt00190  Oxidative phosphorylation
saqt00220  Arginine biosynthesis
saqt00250  Alanine, aspartate and glutamate metabolism
saqt00280  Valine, leucine and isoleucine degradation
saqt00350  Tyrosine metabolism
saqt00470  D-Amino acid metabolism
saqt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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