KEGG   PATHWAY: sat00020
Entry
sat00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Syntrophus aciditrophicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sat00020  Citrate cycle (TCA cycle)
sat00020

Module
sat_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sat00020]
sat_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sat00020]
sat_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sat00020]
Other DBs
GO: 0006099
Organism
Syntrophus aciditrophicus [GN:sat]
Gene
SYN_02536  isopropylmalate/homocitrate/citramalate synthases [KO:K05942] [EC:2.3.3.3]
SYN_01409  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SYN_01410  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
SYN_02498  2-oxoglutarate synthase subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SYN_03162  2-oxoacid ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SYN_03163  2-oxoacid ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SYN_02499  2-oxoglutarate synthase subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SYN_02500  pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit [KO:K00177] [EC:1.2.7.3]
SYN_02497  ferridoxin [KO:K00176] [EC:1.2.7.3]
SYN_02502  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
SYN_00001  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
SYN_02501  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SYN_03227  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SYN_00159  fumarate hydratase alpha subunit [KO:K01677] [EC:4.2.1.2]
SYN_00158  fumarate hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
SYN_01040  pyruvate carboxylase carboxyltransferase subunit [KO:K01958] [EC:6.4.1.1]
SYN_01041  pyruvate carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
SYN_02086  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SYN_00155  pyruvate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
SYN_00692  pyruvate synthase alpha chain [KO:K00169] [EC:1.2.7.1]
SYN_00154  pyruvate:ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
SYN_00691  pyruvate synthase subunit [KO:K00170] [EC:1.2.7.1]
SYN_00157  pyruvate:ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
SYN_00693  pyruvate synthase gamma chain [KO:K00172] [EC:1.2.7.1]
SYN_00694  pyruvate synthase delta subunit [KO:K00171] [EC:1.2.7.1]
SYN_00156  pyruvate:ferredoxin oxidoreductase delta subunit [KO:K00171] [EC:1.2.7.1]
SYN_02201  pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent) [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sat00010  Glycolysis / Gluconeogenesis
sat00053  Ascorbate and aldarate metabolism
sat00061  Fatty acid biosynthesis
sat00071  Fatty acid degradation
sat00190  Oxidative phosphorylation
sat00220  Arginine biosynthesis
sat00250  Alanine, aspartate and glutamate metabolism
sat00280  Valine, leucine and isoleucine degradation
sat00350  Tyrosine metabolism
sat00470  D-Amino acid metabolism
sat00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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