KEGG   PATHWAY: scam00515
Entry
scam00515                   Pathway                                
Name
Mannose type O-glycan biosynthesis - Struthio camelus australis (South African ostrich)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
scam00515  Mannose type O-glycan biosynthesis
scam00515

Other DBs
GO: 0035269
Organism
Struthio camelus australis (South African ostrich) [GN:scam]
Gene
104138261  POMT1; protein O-mannosyl-transferase 1 isoform X1 [KO:K00728] [EC:2.4.1.109]
104138646  CHST10; carbohydrate sulfotransferase 10 [KO:K09674] [EC:2.8.2.-]
104139268  B4GALT3; LOW QUALITY PROTEIN: beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
104139983  MGAT5B; LOW QUALITY PROTEIN: alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B [KO:K09661] [EC:2.4.1.-]
104143521  B3GAT1; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1 [KO:K00735] [EC:2.4.1.135]
104143631  POMGNT1; LOW QUALITY PROTEIN: protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [KO:K09666] [EC:2.4.1.-]
104144278  [KO:K00735] [EC:2.4.1.135]
104144279  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
104144374  B4GALT1; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
104144557  POMT2; protein O-mannosyl-transferase 2 [KO:K00728] [EC:2.4.1.109]
104147892  ISPD; isoprenoid synthase domain-containing protein isoform X1 [KO:K21031] [EC:2.7.7.40]
104147964  ST3GAL3; CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X1 [KO:K00781] [EC:2.4.3.6]
104147998  B4GALT2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
104148168  B3GALNT2; UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 [KO:K09654] [EC:2.4.1.313]
104148899  FUT9; alpha-(1,3)-fucosyltransferase 9 [KO:K03663] [EC:2.4.1.152]
104150224  LARGE; LOW QUALITY PROTEIN: glycosyltransferase-like protein LARGE1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
104150374  GYLTL1B; LOW QUALITY PROTEIN: glycosyltransferase-like protein LARGE2 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
104152069  POMK; protein O-mannose kinase [KO:K17547] [EC:2.7.1.183]
104152296  FKTN; fukutin [KO:K19872] [EC:2.7.8.-]
104152517  POMGNT2; protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 [KO:K18207] [EC:2.4.1.312]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026  
G13027  
G13028  
G13082  
G13083  
G13084  O-Mannose core M1
G13085  
G13086  O-Mannose core M2
G13087  
G13088  
G13089  
G13090  
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093  
G13094  
G13095  
G13096  
G13097  
G13098  
G13099  
G13100  
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
scam00510  N-Glycan biosynthesis
KO pathway
ko00515   

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