KEGG   PATHWAY: sula00020
Entry
sula00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfolobus sp. A20
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sula00020  Citrate cycle (TCA cycle)
sula00020

Module
sula_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sula00020]
sula_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sula00020]
sula_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sula00020]
sula_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sula00020]
sula_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sula00020]
Other DBs
GO: 0006099
Organism
Sulfolobus sp. A20 [GN:sula]
Gene
BFU36_09420  citrate synthase [KO:K01647] [EC:2.3.3.1]
BFU36_01060  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BFU36_09635  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BFU36_11465  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BFU36_12325  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BFU36_00940  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BFU36_09505  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BFU36_11130  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BFU36_11135  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BFU36_08415  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BFU36_08420  succinate--CoA ligase [KO:K01903] [EC:6.2.1.5]
BFU36_10445  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BFU36_10440  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
BFU36_10435  disulfide reductase [KO:K00241]
BFU36_10430  succinate dehydrogenase [KO:K18859]
BFU36_01195  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BFU36_09440  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BFU36_11015  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BFU36_12305  dehydrogenase [KO:K00627] [EC:2.3.1.12]
BFU36_00695  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
BFU36_06385  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
BFU36_06380  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
BFU36_00700  pyruvate synthase [KO:K00170] [EC:1.2.7.1]
BFU36_06395  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
BFU36_06390  ferredoxin [KO:K00171] [EC:1.2.7.1]
BFU36_00690  (4Fe-4S)-binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sula00010  Glycolysis / Gluconeogenesis
sula00053  Ascorbate and aldarate metabolism
sula00061  Fatty acid biosynthesis
sula00071  Fatty acid degradation
sula00190  Oxidative phosphorylation
sula00220  Arginine biosynthesis
sula00250  Alanine, aspartate and glutamate metabolism
sula00280  Valine, leucine and isoleucine degradation
sula00350  Tyrosine metabolism
sula00470  D-Amino acid metabolism
sula00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system