KEGG   PATHWAY: tmm00020
Entry
tmm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermotoga maritima MSB8
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tmm00020  Citrate cycle (TCA cycle)
tmm00020

Module
tmm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tmm00020]
Other DBs
GO: 0006099
Organism
Thermotoga maritima MSB8 [GN:tmm]
Gene
Tmari_0288  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
Tmari_1155  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Tmari_0379  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Tmari_1767  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Tmari_1171  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Tmari_0880  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Tmari_1768  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Tmari_1172  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Tmari_0402  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Tmari_1769  2-oxoglutarate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Tmari_0403  2-oxoglutarate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Tmari_1766  Ketoisovalerate oxidoreductase subunit VorC [KO:K00176] [EC:1.2.7.3]
Tmari_0881  Ferredoxin [KO:K00176] [EC:1.2.7.3]
Tmari_0537  Fumarate hydratase class I; L(+)-tartrate dehydratase alpha subunit [KO:K01677] [EC:4.2.1.2]
Tmari_0538  Fumarate hydratase class I; L(+)-tartrate dehydratase beta subunit [KO:K01678] [EC:4.2.1.2]
Tmari_0014  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Tmari_0015  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Tmari_0012  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Tmari_0013  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tmm00010  Glycolysis / Gluconeogenesis
tmm00053  Ascorbate and aldarate metabolism
tmm00061  Fatty acid biosynthesis
tmm00071  Fatty acid degradation
tmm00190  Oxidative phosphorylation
tmm00220  Arginine biosynthesis
tmm00250  Alanine, aspartate and glutamate metabolism
tmm00280  Valine, leucine and isoleucine degradation
tmm00350  Tyrosine metabolism
tmm00470  D-Amino acid metabolism
tmm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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