KEGG   PATHWAY: toh00020
Entry
toh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tannerella serpentiformis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
toh00020  Citrate cycle (TCA cycle)
toh00020

Module
toh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:toh00020]
toh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:toh00020]
Other DBs
GO: 0006099
Organism
Tannerella serpentiformis [GN:toh]
Gene
BCB71_05490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCB71_02270  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BCB71_08365  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BCB71_02275  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BCB71_08370  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BCB71_02280  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
BCB71_12360  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
BCB71_10045  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCB71_10050  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BCB71_10040  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
BCB71_00015  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
BCB71_00010  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
BCB71_01670  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BCB71_04030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCB71_08320  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BCB71_06255  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
toh00010  Glycolysis / Gluconeogenesis
toh00061  Fatty acid biosynthesis
toh00190  Oxidative phosphorylation
toh00220  Arginine biosynthesis
toh00250  Alanine, aspartate and glutamate metabolism
toh00280  Valine, leucine and isoleucine degradation
toh00470  D-Amino acid metabolism
toh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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