KEGG   PATHWAY: tsin00020
Entry
tsin00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Thermocoleostomius sinensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tsin00020  Citrate cycle (TCA cycle)
tsin00020

Module
tsin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tsin00020]
tsin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tsin00020]
Other DBs
GO: 0006099
Organism
Thermocoleostomius sinensis [GN:tsin]
Gene
OXH18_02390  citrate synthase [KO:K01647] [EC:2.3.3.1]
OXH18_17120  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
OXH18_12125  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
OXH18_00650  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OXH18_00655  isocitrate/isopropylmalate family dehydrogenase [KO:K00031] [EC:1.1.1.42]
OXH18_02765  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OXH18_04605  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
OXH18_04600  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OXH18_17785  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OXH18_18160  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OXH18_09515  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
OXH18_11130  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OXH18_17490  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OXH18_10445  FAD-dependent oxidoreductase [KO:K00116] [EC:1.1.5.4]
OXH18_12895  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
OXH18_10275  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
OXH18_16355  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tsin00010  Glycolysis / Gluconeogenesis
tsin00053  Ascorbate and aldarate metabolism
tsin00061  Fatty acid biosynthesis
tsin00071  Fatty acid degradation
tsin00190  Oxidative phosphorylation
tsin00220  Arginine biosynthesis
tsin00250  Alanine, aspartate and glutamate metabolism
tsin00280  Valine, leucine and isoleucine degradation
tsin00350  Tyrosine metabolism
tsin00470  D-Amino acid metabolism
tsin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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