KEGG   PATHWAY: tvu00020
Entry
tvu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermoactinomyces vulgaris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tvu00020  Citrate cycle (TCA cycle)
tvu00020

Module
tvu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tvu00020]
tvu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tvu00020]
tvu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tvu00020]
tvu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tvu00020]
tvu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tvu00020]
Other DBs
GO: 0006099
Organism
Thermoactinomyces vulgaris [GN:tvu]
Gene
AB849_001195  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
AB849_007065  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
AB849_001190  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AB849_007650  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
AB849_012390  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AB849_006985  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AB849_010625  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AB849_010630  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AB849_010130  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AB849_010125  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AB849_000715  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AB849_000710  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AB849_000720  succinate dehydrogenase [KO:K00241]
AB849_000700  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AB849_001185  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AB849_010050  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AB849_006940  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AB849_006970  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AB849_006975  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
AB849_006980  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tvu00010  Glycolysis / Gluconeogenesis
tvu00053  Ascorbate and aldarate metabolism
tvu00061  Fatty acid biosynthesis
tvu00071  Fatty acid degradation
tvu00190  Oxidative phosphorylation
tvu00220  Arginine biosynthesis
tvu00250  Alanine, aspartate and glutamate metabolism
tvu00280  Valine, leucine and isoleucine degradation
tvu00350  Tyrosine metabolism
tvu00470  D-Amino acid metabolism
tvu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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