KEGG   PATHWAY: ypk03430
Entry
ypk03430                    Pathway                                
Name
Mismatch repair - Yersinia pestis KIM10+ (biovar Mediaevalis)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ypk03430  Mismatch repair
ypk03430

Other DBs
GO: 0006298
Organism
Yersinia pestis KIM10+ (biovar Mediaevalis) [GN:ypk]
Gene
Y1106.pl  [KO:K02337] [EC:2.7.7.7]
y0100  [KO:K01972] [EC:6.5.1.2]
y0389  uvrD; DNA-dependent ATPase I and helicase II [KO:K03657] [EC:5.6.2.4]
y0582  ssb; ssDNA-binding protein [KO:K03111]
y0628  mutL; DNA mismatch repair protein [KO:K03572]
y0745  holC; DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
y0835  mutS; methyl-directed mismatch repair protein [KO:K03555]
y1010  xseB; exonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
y1060  dnaX; DNA polymerase III, tau and gamma subunits [KO:K02343] [EC:2.7.7.7]
y1182  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
y1361  xseA; exonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
y1492  lig; DNA ligase [KO:K01972] [EC:6.5.1.2]
y1765  holB; DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
y2224  [KO:K06223] [EC:2.1.1.72]
y2525  holE; DNA polymerase III, theta subunit [KO:K02345] [EC:2.7.7.7]
y2610  sbcB; exonuclease I [KO:K01141] [EC:3.1.11.1]
y3094  dnaQ; DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
y3120  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
y3175  mutH; methyl-directed mismatch repair protein [KO:K03573]
y3274  recJ; ssDNA exonuclease [KO:K07462] [EC:3.1.-.-]
y3752  holD; DNA polymerase III, psi subunit [KO:K02344] [EC:2.7.7.7]
y3937  dam; DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
y4112  dnaN; DNA polymerase III, beta-subunit [KO:K02338] [EC:2.7.7.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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