Secondary Metabolites in Pathway Maps Secondary Metabolites in Pathway Maps| Map | Pathway | Module | KEGG ID | Name | Remark |
| 00902 | Geraniol biosynthesis | C01500 | Geraniol | Monoterpenoid | |
| Myrcene biosynthesis | C06074 | Myrcene | |||
| Limonene biosynthesis | C00521 C06099 |
(S)-Limonene (R)-Limonene |
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| Menthol biosynthesis | C00400 | Menthol | |||
| Carvone biosynthesis | C01767 C11383 |
(-)-Carvone (+)-Carvone |
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| Pinene biosynthesis | C06308 C06307 |
alpha-Pinene beta-Pinene |
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| Camphene biosynthesis | C06305 C06304 |
(-)-Camphene (+)-Camphene |
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| Camphor biosynthesis | C01765 C00808 |
(+)-Borneol (+)-Camphor |
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| Secologanin biosynthesis | C01433 C01852 |
Loganin Secologanin |
Iridoid/secoiridoid | ||
| 00909 | Farnesol biosynthesis | C01126 C03220 |
(2E,6E)-Farnesol (2Z,6E)-Farnesol |
Sesquiterpenoid | |
| Germacrene biosynthesis | C16141 C09672 C19747 C16142 |
Germacrene A Germacrene B Germacrene C Germacrene D |
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| Bisabolene biosynthesis | C19749 C16775 C16814 C19748 |
alpha-Bisabolene beta-Bisabolene (Z)-gamma-Bisabolene (E)-gamma-Bisabolene |
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| Humulene biosynthesis | C09684 C16829 |
alpha-Humulene gamma-Humulene |
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| Cadinene biosynthesis | C06394 | delta-Cadinene | |||
| Hopane biosynthesis | C06309 C06310 |
Hopan-22-ol Hop-22(29)-ene |
Triterpenoid | ||
| 00904 | Gibberellin biosynthesis | M00927 M00928 M00929 |
C00859 C01699 C11864 |
Gibberellin A1 Gibberellin A3 Gibberellin A4 |
Plant hormone |
| Labdane biosynthesis | C09183 C18224 |
Sclareol Stemod-13(17)-ene |
Diterpenoid | ||
| Abietate biosynthesis | C06087 | Abietate | |||
| Paclitaxel biosynthesis | C11900 C07394 |
Baccatin III Paclitaxel |
Taxol, diterpenoid | ||
| 00906 | alpha-Carotene biosynthesis | C05433 | alpha-Carotene | Provitamin A carotenoid | |
| beta-Carotene biosynthesis | M01045 | C02094 | beta-Carotene | ||
| Lycopene biosynthesis | M00097 | C05432 | Lycopene | Carotenoid | |
| Spirilloxanthin biosynthesis | M01039 | C15881 C15888 |
Spirilloxanthin Tetrahydrospirilloxanthin |
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| Spheroidene biosynthesis | C15900 C15903 |
Spheroidene Spheroidenone |
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| Okenone biosynthesis | M01043 | C16280 | Okenone | ||
| Bacterioruberin biosynthesis | M01041 | C22349 | Bacterioruberin | ||
| Astaxanthin biosynthesis | M01044 | C08580 | Astaxanthin | ||
| Myxoxanthophyll biosynthesis | C15937 | (3R,2'S)-Myxol 2’-(2,4-di-O-methyl-alpha-L-fucoside) | Carotenoid glycoside | ||
| Xanthophyll cycle | M01046 | C06098 C08579 C08614 |
Zeaxanthin Antheraxanthin Violaxanthin |
Xanthophyll | |
| Lutein biosynthesis | M01040 | C08601 | Lutein | ||
| Neurosporaxanthin bisynthesis | M01042 | C08607 | Neurosporaxanthin | ||
| Diapocarotene biosynthesis | M01038 | C16148 | Staphyloxanthin | ||
| Abscisic acid biosynthesis | M00372 | C06082 | Abscisic acid | Plant hormone | |
| 00905 | Brassinosteroid biosynthesis | M00371 | C15794 C08814 |
Castasterone Brassinolide |
Plant hormone |
| 00981 | Juvenile hormone biosynthesis | M01047 | C09694 | Juvenile hormone III | Insect hormone |
| Ecdysone biosynthesis | M01013 | C00477 | Ecdysone | ||
| 00908 | Zeatin biosynthesis | C00371 C15545 |
trans-Zeatin cis-Zeatin |
Plant hormone | |
| 00522 | Tylosin biosynthesis | M00773 | C01457 | Tylosin | Macrolide antibiotic |
| Mycinamicin biosynthesis | M00934 | C15680 | Mycinamicin II | ||
| Erythromycin biosynthesis | M00774 | C01912 C06653 |
Erythromycin A Erythromycin B |
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| Oleandomycin biosynthesis | M00775 | C01946 | Oleandomycin | ||
| Pikromycin/methymycin biosynthesis | M00776 | C11999 | Pikromycin | ||
| Avermectin biosynthesis | M00777 | C11984 | Avermectin A1a | Macrolide pesticide | |
| 01051 | Rifamycin biosynthesis | C12044 | Rifamycin SV | Ansamycin antibiotic | |
| Ansamitocin biosynthesis | C12045 | Ansamitocin P-3 | Ansamycin antitumor antibiotic | ||
| 01059 | 9-membered enediyne biosynthesis | M00824 | C11438 C12049 C21301 |
C-1027 Neocarzinostatin Kedarcidin |
Enediyne antitumor antibiotic |
| 10-membered enediyne biosynthesis | M00825 M00833 |
C11469 | Calicheamicin gamma(1)I | ||
| 01057 00253 |
Benzoisochromanequinone biosynthesis | M00779 | C06691 C12437 C06799 |
Actinorhodin Medermycin Granaticin |
Aromatic polyketide |
| Tetracycline biosynthesis | M00778 M00780 M00823 |
C06570 C06571 C06624 |
Tetracycline Chlortetracycline Oxytetracycline |
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| Angucycline biosynthesis | C18685 C18822 C12413 C18680 C12395 |
Landomycin E Landomycin A Urdamycin A Jadomycin A Jadomycin B |
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| Anthracycline biosynthesis | M00781 | C01907 C01661 C18638 C18642 C18633 |
Daunorubicin Doxorubicin Aclacinomycin A Rhodomycin B Nogalamycin |
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| Mithramycin biosynthesis | M00782 | C12389 | Mithramycin | ||
| Tetracenomycin biosynthesis | M00783 M00784 |
C06801 C12380 C12381 |
Tetracenomycin C Tetracenomycin X Elloramycin A |
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| 01053 | Enterobactin biosynthesis | C05821 | Enterobactin | Siderophore | |
| Vibriobactin biosynthesis | C06769 | Vibriobactin | |||
| Yersiniabactin biosynthesis | C12038 | Yersiniabactin | |||
| Petrobactin biosynthesis | C22273 | Petrobactin | |||
| 01055 | Vancomycin biosynthesis | C06689 | Vancomycin | Glycopeptide antibiotic | |
| Chloroeremomycin biosynthesis | C12014 | Chloroeremomycin | |||
| 00940 | Monolignol biosynthesis | M00039 | C02646 C00590 C02325 |
4-Coumaryl alcohol Coniferyl alcohol Sinapyl alcohol |
Monolignol |
| 00940 00941 |
Flavanone biosynthesis | M00940 M00137 |
C09827 C09762 C09616 C00509 C05631 C05911 |
Pinocembrin Liquiritigenin Butrin Naringenin Eriodictyol Pentahydroxyflavanone |
Flavanone |
| 00941 00944 |
Flavone biosynthesis | C01477 C01514 |
Apigenin Luteolin |
Flavone | |
| Flavonol biosynthesis | C05903 C00389 C11620 |
Kaempferol Quercetin Syringetin |
Flavonol | ||
| 00941 00942 |
Anthocyanin biosynthesis | M00138 | C05904 C05905 C05908 |
Pelargonidin Cyanidin Delphinidin |
Anthocyanidin/anthocyanin |
| 00943 | Isoflavonoid biosynthesis | M00941 | C10208 C06563 |
Daidzein Genistein |
Isoflavonoid |
| Pterocarpan biosynthesis | M00942 | C10503 | Medicarpin | Pterocarpan | |
| 00945 | Stilbenoid biosynthesis | C03582 C10287 C01745 |
Resveratrol Pterostilbene Pinosylvin |
Stilbenoid | |
| Diarylheptanoid biosynthesis | C10443 | Curcumin | Diarylheptanoid | ||
| Gingerol biosynthesis | C10462 | 6-Gingerol | Gingerol, pungent | ||
| 00901 | Psilocybin biosynthesis | M00962 | C07576 C08312 |
Psilocybin Psilocin |
Indole alkaloid |
| Ergot alkaloid biosynthesis | M00963 M00964 |
C07544 C20436 C20437 C20438 |
Ergotamine Fumigaclavine A Fumigaclavine B Fumigaclavine C |
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| Monoterpene indole alkaloid biosynthesis | M00981 M00979 M00980 M00965 |
C02151 | (19E)-Geissoschizine | ||
| C06542 C02074 C09239 |
Ajmaline Raucaffricine Sarpagine |
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| C06522 C22926 C09084 |
Strychnine Diaboline Brucine |
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| C01626 C07201 C07204 |
Vindoline Vinblastine Vincristine |
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| 00403 | Indole diterpene alkaloid biosynthesis | M00661 | C20530 C20555 C20550 C20551 |
Paspaline Aflatrem Lolitrem E Lolitrem B |
Indole diterpene alkaloid |
| 00950 | Isoquinoline alkaloid biosynthesis | M00943 M00944 M00945 M00946 |
C02105 C01516 C06162 C09592 |
Reticuline Morphine Sanguinarine Noscapine |
Isoquinoline alkaloid |
| 00960 | Tropane alkaloid biosynthesis | C01851 C01416 |
Scopolamine Cocaine |
Tropane alkaloid | |
| Piperidine alkaloid biosynthesis | C03882 C10171 C07475 |
Piperine (-)-Sedamine Lobeline |
Piperidine alkaloid | ||
| Pyridine alkaloid biosynthesis | C06524 C01004 C10126 |
Nornicotine Trigonelline Anatabine |
Pyridine alkaloid | ||
| Quinolizidine alkaloid biosynthesis | C10773 | Lupinine | Quinolizidine alkaloid | ||
| Indolizidine alkaloid biosynthesis | C06185 C10173 |
Slaframine Swainsonine |
Indolizidine alkaloid | ||
| Pyrrolizidine alkaloid biosynthesis | C15612 | Senecionine N-oxide | Pyrrolizidine alkaloid | ||
| Pyrrolidine alkaloid biosynthesis | C01679 C06521 |
Hygrine Cuscohygrine |
Pyrrolidine alkaloid | ||
| 00965 | Betalain biosynthesis | M00961 | C08540 | Betanin | Betacyanin |
| C08557 | Miraxanthin-V | Betaxanthin | |||
| 00966 | Glucosinolate biosynthesis | M00370 | C05837 | Glucobrassicin | |
| 00402 | Benzoxazinoid to be removed | ||||
| 00311 | Penicillin biosynthesis | M00672 | C00395 | Penicillin | beta-Lactam antibiotic |
| Cephalosporin biosynthesis | M00673 | C06566 | Cephamycin C | ||
| 00332 | Carbapenem biosynthesis | M00675 | C06669 | Carbapenem-3-carboxylate | |
| 00261 | Monobctam biosynthesis | M00736 | C01941 | Nocardicin A | |
| 00331 | Clavaminic acid biosynthesis | M00674 | C06660 | Clavaminic acid | |
| 00521 | Streptomycin biosynthesis | M00793 | C00413 | Streptomycin | Aminoglycoside antibiotic |
| 00524 | Kanamycin biosynthesis | C01822 C00825 C01823 |
Kanamycin A Kanamycin B Kanamycin C |
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| Neomycin biosynthesis | C01441 C01737 C15652 |
Neomycin A Neomycin B Neomycin C |
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| Gentamicin biosynthesis | C07656 C00908 C02033 C17706 |
Gentamicin C1 Gentamicin C1a Gentamicin C2 Gentamicin C2b |
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| Paromomycin biosynthesis | C00832 | Paromomycin | Aminoglycoside antibiotic, antiparasitic | ||
| 00525 | Acarbose biosynthesis | M00814 | C06802 | Acarbose | C7N-aminocyclitol, antidiabetic drug |
| Validamycin biosynthesis | M00815 | C12112 C21293 |
Validamycin A Validamycin B |
C7N-aminocyclitol antibiotic, fungicide | |
| 00401 | Novobiocin biosynthesis | C05080 | Novobiocin | Aminocoumarin antibiotic | |
| Coumermycin biosynthesis | C05073 | Coumermycin A1 | |||
| Clorobiocin biosynthesis | C12032 | Clorobiocin | |||
| 00404 | Staurosporine biosynthesis | M00805 | C02079 | Staurosporine | Indolocarbazole alkaloid, PKC inhibitor |
| Rebeccamycin biosynthesis | M00789 | C19701 | Rebeccamycin | Indolocarbazole alkaloid, antitumor antibiotic | |
| Violacein biosynthesis | M00808 | C21136 | Violacein | Bisindole alkaloid | |
| Pyrrolnitrin biosynthesis | M00790 | C12491 | Pyrrolnitrin | Pyrrole antibiotic | |
| Fumitremorgin alkaloid biosynthesis | M00786 | C20564 | Fumitremorgin A | Mycotoxin | |
| Meleagrin biosynthesis | C22168 | Meleagrin | |||
| 00405 | Phenazine biosynthesis | C21476 | Phenazine | Phenazine | |
| Pyocyanine biosynthesis | M00835 | C01748 | Pyocyanine | ||
| PQS biosynthesis | C11848 C20643 |
2-Heptyl-3-hydroxy-quinolone 2-Heptyl-4-quinolone |
Quinolone | ||
| 00333 | Prodigiosin biosynthesis | M00837 | C21565 | Prodigiosin | Tripyrrole antibiotic |
| Undecylprodigiosin biosynthesis | M00838 | C12023 | Undecylprodigiosin | ||
| 00254 | Aflatoxin biosynthesis | M00937 | C06800 | Aflatoxin B1 | Mycotoxin |
| 00996 | Cucurbitacin biosynthesis | C08794 C08795 C08797 |
Cucurbitacin B Cucurbitacin C Cucurbitacin E |
Triterpenoid | |
| Solanine and tomatine biosynthesis | C10820 C10827 |
Solanine Tomatine |
Steroid alkaloid | ||
| Ephedrine biosynthesis | C01575 C02765 |
Ephedrine Pseudoephedrine |
Phenethylamine alkaloid | ||
| Capsaicin biosynthesis | C06866 | Capsaicin | Capsaicinoid/vanilloid, highly pungent | ||
| C00755 | Vanillin | Vanilloid, vanilla flavoring | |||
| Acridone alkaloid biosynthesis | C10632 C10722 C10738 |
Acronycine Melicopicine Rutacridone |
Acridone alkaloid | ||
| (Quinoline alkaloid) | C01897 C11379 C06528 |
Camptothecin Cinchonidine Cinchonine |
Quinoline alkaloid | ||
| 00998 | Kanosamine biosynthesis | M00877 | C12212 | Kanosamine | Aminosugar antibiotic |
| Aurachin biosynthesis | M00848 | C21875 C21140 C21330 C10641 |
Aurachin A Aurachin B Aurachin C Aurachin D |
Quinoline antibiotic | |
| Bacilysin biosynthesis | M00787 | C20942 | Bacilysin | Dapdiamide antibiotic | |
| Dapdiamides biosynthesis | M00904 | C20962 C20963 C20964 |
Dapdiamide A Dapdiamide B Dapdiamide C |
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| Puromycin biosynthesis | M00889 | C01610 | Puromycin | Aminonucleoside antibiotic | |
| Fosfomycin biosynthesis | M00903 | C06454 | Fosfomycin | Phosphonate antibiotic | |
| Cremeomycin biosynthesis | M00951 | C22416 | Cremeomycin | ortho-Diazoquinone, cytotoxic antibiotic | |
| Fumagillin biosynthesis | M00969 | C09668 | Fumagillin | Meroterpenoid antibiotic | |
| Pentalenolactone biosynthesis | M00819 | C20407 | Pentalenolactone | Sesquiterpenoid antibiotic | |
| Terpentecin biosynthesis | M00788 | C21093 | Terpentecin | Diterpenoid antibiotic | |
| Roseoflavin biosynthesis | M00890 | C21647 | Roseoflavin | Riboflavin analogue | |
| Cycloserine biosynthesis | M00785 | C08057 | Cycloserine | Alanine analogue antibiotic | |
| 00999 | Crocin biosynthesis | M00900 | C08589 C08588 |
Crocin Crocetin |
Apocarotenoid |
| Ginsenoside biosynthesis | C20713 C08946 |
Ginsenoside Rb1 Ginsenoside Rg1 |
Triterpene saponin | ||
| Saponin adjuvant biosynthesis | M00971 | C22666 | QS-7 | ||
| Cannabidiol biosynthesis | M00894 | C07578 C06972 |
Cannabidiol Dronabinol |
Cannabinoid | |
| Mugineic acid biosynthesis | M00953 | C15500 | Mugineic acid | Phytosiderophore | |
| Pentagalloylglucose biosynthesis | C04576 | Pentagalloylglucose | Gallotannin/ellagitannin precursor | ||
| Benzoxazinoid biosynthesis | M00952 | C15770 C15772 C04831 |
DIBOA DIBOA-glucoside DIMBOA-glucoside |
Benzoxazinoid, plant antibiotic, defense compound | |
| Gramine biosynthesis | C08304 | Gramine | Indole alkaloid | ||
| Coumarin biosynthesis | C05851 | Coumarin | Coumarin | ||
| Furanocoumarin biosynthesis | C09315 C09305 C22152 |
Umbelliferone Psoralen Bergamottin |
Furanocoumarin | ||
| Hordatine biosynthesis | C08307 C08308 |
Hordatine A Hordatine B |
Hordatine, defense compound | ||
| Podophyllotoxin biosynthesis | M00902 | C10874 | Podophyllotoxin | Lignan | |
| 00997 | Ditryptophenaline biosynthesis | M00891 | C22144 | (-)-Ditryptophenaline | Indole alkaloid |
| Fumiquinazoline D biosynthesis | M00901 | C22149 | Fumiquinazoline D | Mycotoxin | |
| Paerucumarin biosynthesis | C22449 | Paerucumarin | Coumarin | ||
| Staphyloferrin A biosynthesis | M00876 | C22102 | Staphyloferrin A | Siderophore | |
| Staphyloferrin B biosynthesis | M00875 | C22075 | Staphyloferrin B | ||
| Aerobactin biosynthesis | M00918 | C05554 | Aerobactin | ||
| Cyclooctatin biosynthesis | M00921 | C21979 | Cyclooctatin | Diterpenoid, lysophospholipase inhibitor | |
| Lovastatin biosynthesis | M00893 | C21130 | Lovastatin acid | Fungal polyketide | |
| Grixazone biosynthesis | M00905 | C20799 | Grixazone B | Grixazone, yellow pigment | |
| Ethynylserine biosynthesis | M00906 | C22141 | L-β-Ethynylserine | Non-proteinogenic amino acid |