PATHWAY: gat04020 Help
Entry
Name
Calcium signaling pathway - Gasterosteus aculeatus (three-spined stickleback)
Description
Ca2+ that enters the cell from the outside is a principal source of signal Ca2+. Entry of Ca2+ is driven by the presence of a large electrochemical gradient across the plasma membrane. Cells use this external source of signal Ca2+ by activating various entry channels with widely different properties. The voltage-operated channels (VOCs) are found in excitable cells and generate the rapid Ca2+ fluxes that control fast cellular processes. There are many other Ca2+-entry channels, such as the receptor-operated channels (ROCs), for example the NMDA (N-methyl-D-aspartate) receptors (NMDARs) that respond to glutamate. There also are second-messenger-operated channels (SMOCs) and store-operated channels (SOCs).
The other principal source of Ca2+ for signalling is the internal stores that are located primarily in the endoplasmic/sarcoplasmic reticulum (ER/SR), in which inositol-1,4,5-trisphosphate receptors (IP3Rs) or ryanodine receptors (RYRs) regulate the release of Ca2+. The principal activator of these channels is Ca2+ itself and this process of Ca2+-induced Ca2+ release is central to the mechanism of Ca2+ signalling. Various second messengers or modulators also control the release of Ca2+. IP3, which is generated by pathways using different isoforms of phospholipase C (PLCbeta, delta, epsilon, gamma and zeta), regulates the IP3Rs. Cyclic ADP-ribose (cADPR) releases Ca2+ via RYRs. Nicotinic acid adenine dinucleotide phosphate (NAADP) may activate a distinct Ca2+ release mechanism on separate acidic Ca2+ stores. Ca2+ release via the NAADP-sensitive mechanism may also feedback onto either RYRs or IP3Rs. cADPR and NAADP are generated by CD38. This enzyme might be sensitive to the cellular metabolism, as ATP and NADH inhibit it.
The influx of Ca2+ from the environment or release from internal stores causes a very rapid and dramatic increase in cytoplasmic calcium concentration, which has been widely exploited for signal transduction. Some proteins, such as troponin C (TnC) involved in muscle contraction, directly bind to and sense Ca2+. However, in other cases Ca2+ is sensed through intermediate calcium sensors such as calmodulin (CALM).
Class
Environmental Information Processing; Signal transduction
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Gasterosteus aculeatus (three-spined stickleback) [GN:
gat ]
Gene
120830360 adora2aa; LOW QUALITY PROTEIN: adenosine A2a receptor a [KO:K04266 ]
120811925 htr5ab; 5-hydroxytryptamine (serotonin) receptor 5A, genome duplicate b isoform X1 [KO:K04161 ]
120835150 guanine nucleotide-binding protein G(s) subunit alpha-like isoform X1 [KO:K04632 ]
120829642 gnas; guanine nucleotide-binding protein G(s) subunit alpha [KO:K04632 ]
120816039 guanine nucleotide-binding protein G(olf) subunit alpha isoform X1 [KO:K04633 ]
120811607 LOW QUALITY PROTEIN: guanine nucleotide-binding protein G(olf) subunit alpha-like [KO:K04633 ]
120827282 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a isoform X1 [KO:K04345 ] [EC:2.7.11.11 ]
120819150 atp2a1l; LOW QUALITY PROTEIN: ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like [KO:K05853 ] [EC:7.2.2.10 ]
120819113 sarcoplasmic reticulum histidine-rich calcium-binding protein [KO:K23450 ]
120818126 LOW QUALITY PROTEIN: stromal interaction molecule 1-like [KO:K16059 ]
120832131 orai1b; calcium release-activated calcium channel protein 1 [KO:K16056 ]
120830329 calcium release-activated calcium channel protein 1-like [KO:K16056 ]
120818340 cacna1c; voltage-dependent L-type calcium channel subunit alpha-1C isoform X1 [KO:K04850 ]
120835798 cacna1da; calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X1 [KO:K04851 ]
120829866 cacna1db; voltage-dependent L-type calcium channel subunit alpha-1D isoform X1 [KO:K04851 ]
120828763 cacna1fa; voltage-dependent L-type calcium channel subunit alpha-1D isoform X1 [KO:K04853 ]
120814961 cacna1fb; calcium channel, voltage-dependent, L type, alpha 1F subunit isoform X1 [KO:K04853 ]
120835575 dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like isoform X1 [KO:K04857 ]
120829078 cacna1sb; calcium channel, voltage-dependent, L type, alpha 1S subunit, b isoform X1 [KO:K04857 ]
120827313 cacna1aa; voltage-dependent P/Q-type calcium channel subunit alpha-1A isoform X1 [KO:K04344 ]
120831493 cacna1bb; voltage-dependent N-type calcium channel subunit alpha-1B [KO:K04849 ]
120830281 cacna1ba; calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X1 [KO:K04849 ]
120823822 voltage-dependent R-type calcium channel subunit alpha-1E isoform X1 [KO:K04852 ]
120815831 voltage-dependent R-type calcium channel subunit alpha-1E-like isoform X1 [KO:K04852 ]
120819163 cacna1g; LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1G [KO:K04854 ]
120827895 cacna1ha; voltage-dependent T-type calcium channel subunit alpha-1I [KO:K04855 ]
120824749 voltage-dependent T-type calcium channel subunit alpha-1I-like [KO:K04856 ]
120827659 cacna1ia; LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1I [KO:K04856 ]
120831572 chrna7a; neuronal acetylcholine receptor subunit alpha-7a [KO:K04809 ]
120816962 neuronal acetylcholine receptor subunit alpha-7-like isoform X1 [KO:K04809 ]
120825163 neuronal acetylcholine receptor subunit alpha-7-like isoform X1 [KO:K04809 ]
120810484 neuronal acetylcholine receptor subunit alpha-7-like isoform X1 [KO:K04809 ]
120826583 chrna11; cholinergic receptor, nicotinic, alpha 11 isoform X1 [KO:K04809 ]
120831888 grin1a; glutamate receptor ionotropic, NMDA 1a isoform X1 [KO:K05208 ]
120825001 grin2bb; glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b isoform X1 [KO:K05210 ]
120819441 glutamate receptor ionotropic, NMDA 2C-like isoform X1 [KO:K05211 ]
120828035 LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C-like [KO:K05211 ]
120832185 grin3a; LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 3A [KO:K05213 ]
120833150 glutamate receptor ionotropic, NMDA 3B-like isoform X1 [KO:K05214 ]
120823396 grin3bb; LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 3B [KO:K05214 ]
120812186 LOW QUALITY PROTEIN: muscarinic acetylcholine receptor M2-like [KO:K04130 ]
120831137 f2r; LOW QUALITY PROTEIN: proteinase-activated receptor 1 [KO:K03914 ]
120831731 LOW QUALITY PROTEIN: proteinase-activated receptor 1-like [KO:K03914 ]
120834185 LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 2A-like [KO:K04157 ]
120821104 lutropin-choriogonadotropic hormone receptor-like isoform X1 [KO:K04248 ]
120831436 guanine nucleotide-binding protein G(q) subunit alpha-like [KO:K04634 ]
120822838 guanine nucleotide-binding protein G(q) subunit alpha-like isoform X1 [KO:K04634 ]
120830300 guanine nucleotide-binding protein G(q) subunit alpha [KO:K04634 ]
120833304 gna11b; guanine nucleotide-binding protein subunit alpha-11b isoform X1 [KO:K04635 ]
120823903 guanine nucleotide-binding protein G(q) subunit alpha-like [KO:K04635 ]
120830463 gna14a; guanine nucleotide-binding protein subunit alpha-14 [KO:K04636 ]
120824361 guanine nucleotide-binding protein subunit alpha-11-like [KO:K04637 ]
120828147 pdgfab; platelet-derived growth factor alpha polypeptide b [KO:K04359 ]
120818176 pdgfc; LOW QUALITY PROTEIN: platelet-derived growth factor C [KO:K05450 ]
120824363 fgf22; LOW QUALITY PROTEIN: fibroblast growth factor 22 [KO:K04358 ]
120808063 vegfab; vascular endothelial growth factor Ab isoform X1 [KO:K05448 ]
120810632 vegfaa; vascular endothelial growth factor A-A isoform X1 [KO:K05448 ]
120831684 gdnfa; glial cell line-derived neurotrophic factor isoform X1 [KO:K05452 ]
120834088 plcd4b; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
120819770 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
120811918 plcd1a; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1a isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
120828145 plcd3a; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
120815618 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
120832519 plcb2; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 isoform X1 [KO:K05858 ] [EC:3.1.4.11 ]
120808518 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4-like isoform X1 [KO:K05858 ] [EC:3.1.4.11 ]
120822086 plcb3; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 isoform X1 [KO:K05858 ] [EC:3.1.4.11 ]
120819165 plce1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 isoform X1 [KO:K05860 ] [EC:3.1.4.11 ]
120835398 inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
120835789 itpr1b; inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
120812471 inositol 1,4,5-trisphosphate receptor type 2-like isoform X1 [KO:K04959 ]
120829151 itpr3; LOW QUALITY PROTEIN: inositol 1,4,5-trisphosphate receptor type 3 [KO:K04960 ]
120820866 mcu; calcium uniporter protein, mitochondrial isoform X1 [KO:K20858 ]
120821969 vdac1; voltage-dependent anion-selective channel protein 1 [KO:K05862 ]
120819421 voltage-dependent anion-selective channel protein 2-like [KO:K15040 ]
120820659 vdac2; voltage-dependent anion-selective channel protein 2 [KO:K15040 ]
120831086 vdac3; voltage-dependent anion-selective channel protein 3 isoform X1 [KO:K15041 ]
120831755 zgc:56235; voltage-dependent anion-selective channel protein 2 isoform X1 [KO:K15041 ]
120828877 troponin C, slow skeletal and cardiac muscles isoform X1 [KO:K05865 ]
120811467 phka2; phosphorylase b kinase regulatory subunit alpha, liver isoform isoform X1 [KO:K07190 ]
120812208 phkb; phosphorylase b kinase regulatory subunit beta isoform X1 [KO:K07190 ]
120822415 phka1a; LOW QUALITY PROTEIN: phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform [KO:K07190 ]
120820869 camk2g2; calcium/calmodulin-dependent protein kinase type II subunit gamma isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
120821702 camk2a; calcium/calmodulin-dependent protein kinase type II subunit alpha isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
120822206 camk2d1; calcium/calmodulin-dependent protein kinase type II delta 1 chain isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
120817636 ppp3cb; serine/threonine-protein phosphatase 2B catalytic subunit beta isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
120821625 ppp3ca; serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
120821676 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
120810967 nuclear factor of activated T-cells, cytoplasmic 1-like isoform X1 [KO:K04446 ]
120826826 nfatc1; nuclear factor of activated T-cells, cytoplasmic 1 isoform X1 [KO:K04446 ]
120835123 nuclear factor of activated T-cells, cytoplasmic 2-like isoform X1 [KO:K17332 ]
120829609 nfatc2a; nuclear factor of activated T-cells, cytoplasmic 2 isoform X1 [KO:K17332 ]
120835154 nfatc3a; nuclear factor of activated T-cells, cytoplasmic 3 isoform X1 [KO:K17333 ]
120808971 nuclear factor of activated T-cells, cytoplasmic 3-like [KO:K17333 ]
120816378 nfatc4; nuclear factor of activated T-cells, cytoplasmic 4 isoform X1 [KO:K17334 ]
120834058 pde1a; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1 [KO:K13755 ] [EC:3.1.4.17 ]
120816009 LOW QUALITY PROTEIN: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A-like [KO:K13755 ] [EC:3.1.4.17 ]
Compound
C01245 D-myo-Inositol 1,4,5-trisphosphate
C06124 Sphingosine 1-phosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
C13051 Nicotinic acid adenine dinucleotide phosphate
Reference
Authors
Berridge MJ, Bootman MD, Roderick HL.
Title
Calcium signalling: dynamics, homeostasis and remodelling.
Journal
Reference
Authors
Berridge MJ, Lipp P, Bootman MD.
Title
The versatility and universality of calcium signalling.
Journal
Reference
Authors
Wang MC, Dolphin A, Kitmitto A.
Title
L-type voltage-gated calcium channels: understanding function through structure.
Journal
Reference
Authors
Ferrier GR, Howlett SE.
Title
Cardiac excitation-contraction coupling: role of membrane potential in regulation of contraction.
Journal
Reference
Authors
Keef KD, Hume JR, Zhong J.
Title
Regulation of cardiac and smooth muscle Ca(2+) channels (Ca(V)1.2a,b) by protein kinases.
Journal
Reference
Authors
Hell JW, Appleyard SM, Yokoyama CT, Warner C, Catterall WA.
Title
Differential phosphorylation of two size forms of the N-type calcium channel alpha 1 subunit which have different COOH termini.
Journal
J Biol Chem 269:7390-6 (1994)
Reference
Authors
Yunker AM.
Title
Modulation and pharmacology of low voltage-activated ("T-Type") calcium channels.
Journal
Reference
Authors
Yakel JL.
Title
Calcineurin regulation of synaptic function: from ion channels to transmitter release and gene transcription.
Journal
Reference
Authors
Fukunaga K, Miyamoto E.
Title
A working model of CaM kinase II activity in hippocampal long-term potentiation and memory.
Journal
Reference
Authors
Della Rocca GJ, van Biesen T, Daaka Y, Luttrell DK, Luttrell LM, Lefkowitz RJ.
Title
Ras-dependent mitogen-activated protein kinase activation by G protein-coupled receptors. Convergence of Gi- and Gq-mediated pathways on calcium/calmodulin, Pyk2, and Src kinase.
Journal
Reference
Authors
Furuichi T, Mikoshiba K.
Title
Inositol 1, 4, 5-trisphosphate receptor-mediated Ca2+ signaling in the brain.
Journal
Reference
Authors
Bruce JI, Straub SV, Yule DI.
Title
Crosstalk between cAMP and Ca2+ signaling in non-excitable cells.
Journal
Reference
Authors
Lee HC, Munshi C, Graeff R.
Title
Structures and activities of cyclic ADP-ribose, NAADP and their metabolic enzymes.
Journal
Reference
Authors
Crompton M.
Title
Mitochondrial intermembrane junctional complexes and their role in cell death.
Journal
Reference
Authors
Grewal SS, York RD, Stork PJ.
Title
Extracellular-signal-regulated kinase signalling in neurons.
Journal
Reference
Authors
Trushin SA, Pennington KN, Carmona EM, Asin S, Savoy DN, Billadeau DD, Paya CV.
Title
Protein kinase Calpha (PKCalpha) acts upstream of PKCtheta to activate IkappaB kinase and NF-kappaB in T lymphocytes.
Journal
Reference
Authors
Hutchins JR, Dikovskaya D, Clarke PR.
Title
Regulation of Cdc2/cyclin B activation in Xenopus egg extracts via inhibitory phosphorylation of Cdc25C phosphatase by Ca(2+)/calmodulin-dependent protein [corrected] kinase II.
Journal
Reference
Authors
Tornquist K
Title
Sphingosine 1-phosphate, sphingosine kinase and autocrine calcium signalling in thyroid cells.
Journal
Reference
Authors
Feske S
Title
Immunodeficiency due to defects in store-operated calcium entry.
Journal
Reference
Authors
Giachini FR, Lima VV, Hannan JL, Carneiro FS, Webb RC, Tostes RC
Title
STIM1/Orai1-mediated store-operated Ca2+ entry: the tip of the iceberg.
Journal
Reference
Authors
Baba Y, Kurosaki T
Title
[Regulation of store-operated calcium entry by STIM1].
Journal
Seikagaku 80:1123-8 (2008)
Reference
Authors
Galione A, Evans AM, Ma J, Parrington J, Arredouani A, Cheng X, Zhu MX
Title
The acid test: the discovery of two-pore channels (TPCs) as NAADP-gated endolysosomal Ca(2+) release channels.
Journal
Reference
Authors
Beard NA, Wei L, Dulhunty AF
Title
Ca(2+) signaling in striated muscle: the elusive roles of triadin, junctin, and calsequestrin.
Journal
Reference
Authors
Marty I
Title
Triadin regulation of the ryanodine receptor complex.
Journal
Reference
Authors
Arvanitis DA, Vafiadaki E, Sanoudou D, Kranias EG
Title
Histidine-rich calcium binding protein: the new regulator of sarcoplasmic reticulum calcium cycling.
Journal
Related pathway
gat04070 Phosphatidylinositol signaling system
KO pathway
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