Entry
Name
Endocytosis - Thamnophis sirtalis (common garter snake)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Thamnophis sirtalis (common garter snake) [GN:
tsr ]
Gene
106546518 zinc finger FYVE domain-containing protein 16-like isoform X1 [KO:K04679 ]
106539793 SH3KBP1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
106552363 BIN1; myc box-dependent-interacting protein 1 isoform X1 [KO:K12562 ]
106552622 EPS15L1; epidermal growth factor receptor substrate 15-like 1 [KO:K12472 ]
106545907 low density lipoprotein receptor adapter protein 1-like isoform X1 [KO:K12474 ]
106542942 low density lipoprotein receptor adapter protein 1-like [KO:K12474 ]
106553049 DNAJC6; putative tyrosine-protein phosphatase auxilin [KO:K09526 ]
106553641 CAPZA2; F-actin-capping protein subunit alpha-2 isoform X1 [KO:K10364 ]
106551322 VPS26A; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
106554990 VPS35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
106544955 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
106550520 STAM2; signal transducing adapter molecule 2 isoform X1 [KO:K04705 ]
106546350 TSG101; tumor susceptibility gene 101 protein isoform X1 [KO:K12183 ]
106540438 VPS28; vacuolar protein sorting-associated protein 28 homolog [KO:K12184 ]
106553197 VPS37C; vacuolar protein sorting-associated protein 37C [KO:K12185 ]
106553734 VPS37B; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
106548990 VPS37A; vacuolar protein sorting-associated protein 37A isoform X1 [KO:K12185 ]
106543288 VPS37D; vacuolar protein sorting-associated protein 37D [KO:K12185 ]
106538337 VPS36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
106539245 VPS25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
106543052 CHMP3; charged multivesicular body protein 3 isoform X1 [KO:K12193 ]
106555902 VPS4A; vacuolar protein sorting-associated protein 4A [KO:K12196 ]
106542957 VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196 ]
106542574 VTA1; vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199 ]
106548796 IGF2R; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
106550851 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
106541808 H-2 class I histocompatibility antigen, Q10 alpha chain-like [KO:K06751 ]
106555327 patr class I histocompatibility antigen, A-5 alpha chain-like [KO:K06751 ]
106546433 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
106544458 class I histocompatibility antigen, F10 alpha chain-like [KO:K06751 ]
106546432 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
106542452 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
106545552 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
106546495 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
106549228 class I histocompatibility antigen, F10 alpha chain-like [KO:K06751 ]
106549729 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
106552817 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
106538643 RUFY1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
106542772 RUFY2; RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482 ]
106556459 VPS45; vacuolar protein sorting-associated protein 45 [KO:K12479 ]
106547503 RAB11FIP1; rab11 family-interacting protein 1 isoform X1 [KO:K12484 ]
106540296 RAB11FIP3; rab11 family-interacting protein 3 isoform X1 [KO:K12485 ]
106552681 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 [KO:K12488 ]
106540996 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like [KO:K12488 ]
106549064 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like [KO:K12488 ]
106546982 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1-like [KO:K12489 ]
106541054 ACAP3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 [KO:K12489 ]
106551587 ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 [KO:K12489 ]
106554794 ARAP1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 [KO:K18439 ]
106547848 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3-like [KO:K12490 ]
106550753 AGAP3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 [KO:K12491 ]
106556597 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 [KO:K12492 ]
106552394 ARFGAP2; ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493 ]
106542721 ARFGAP3; ADP-ribosylation factor GTPase-activating protein 3 isoform X1 [KO:K12493 ]
106540043 PH and SEC7 domain-containing protein 3-like isoform X1 [KO:K12494 ]
106542293 IQSEC1; IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
106540504 ARFGEF1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1 [KO:K18442 ]
106539556 ARFGEF2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442 ]
106537514 GBF1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
tsr04060 Cytokine-cytokine receptor interaction
tsr04070 Phosphatidylinositol signaling system
tsr04130 SNARE interactions in vesicular transport
KO pathway
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